Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60476g00014 ATGTGTATTACAAAACCCCCATTCCCTCGTCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCCCAGCAAGTTCTCCGTCATGTCAACGTCTCTCTCCACGATGGAAGTGCCCTCGTCCTGACTGGTGCAAACGGCTCCGGCAAGACCACCTTCCTTCGCATGCTAGCTGGATTTTCCCGGCCTTCCGCCGGTGAGATTCTTTGGAATGGACACAACATACAAGAGTCTGGAATCTTCCACCAGTACAAGCTCCAGCTCAACTGGCTCTCCCTCAAGGATGCAATCACTGATACTTTCACGGTTCTCGAAAATGTTCAGTGGTTTGAGGTTCTTGAAGGAAAGTACGGCAGGTCTTTGCCTGCGCTTGAGTTGATGGGGCTGGGCAGATTGGCCAAGGAGAAGCCAAGGATGCTATCCATGGGGCAGCGGAAAAGGGTGCAAATTGCAAGGTTGATCGCCCTCGATCGACCCATATGGTTGCTTGATGAGCCTTCCGTTGCGTTGGATGATGAAGGGGTTAAGTTACTTGAGTACGTTATCTCGGAACATCGGAAAAATGGAGGTATTGTGATTGTGGCTACTCATTTGCCTATCGAGATACCCGATTCCATGGTGTTGAGGCTTCCACCCAGGTTTCCAAGGAGGATGACTTTCTTTGATATGCTTGACCGTTCTGATATTATGTAA 690 0.4928 MCITKPPFPRLLLNNVSCMRNAQQVLRHVNVSLHDGSALVLTGANGSGKTTFLRMLAGFSRPSAGEILWNGHNIQESGIFHQYKLQLNWLSLKDAITDTFTVLENVQWFEVLEGKYGRSLPALELMGLGRLAKEKPRMLSMGQRKRVQIARLIALDRPIWLLDEPSVALDDEGVKLLEYVISEHRKNGGIVIVATHLPIEIPDSMVLRLPPRFPRRMTFFDMLDRSDIM 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60476g00014 229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 229 IPR003439 GO:0005524
Stsc60476g00014 229 SMART AAA_5 35 223 IPR003593 GO:0016887
Stsc60476g00014 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 198 IPR027417 -
Stsc60476g00014 229 NCBIfam heme ABC exporter ATP-binding protein CcmA 13 208 IPR005895 GO:0017004|GO:0022857
Stsc60476g00014 229 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 6 222 IPR005895 GO:0017004|GO:0022857
Stsc60476g00014 229 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Stsc60476g00014 229 Gene3D - 8 208 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60476g00014 Stsc-Chr60476 100825 103297 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60476g00014 24 197 Calmodulin-binding Proteins AT2G36910 23.936 3.41e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60476g00014 - - cpap:110815669 400.979