Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60475g00001 ATGAAGAACCAGGGGTGTCAGGTTGAGGCAATAGGGATCAACTACAAGATTTGCACAGGGACAACAGAGCAAACTTTCAAGATCTTCAGAAAACCTCCACAACTGAATAATGAAGACGATGGTGAGGAACCAGAACCAGAAGAGGAAGCAAGAAATGATGATCAAAGTTCAATGTGCAACAGAGTTAGGCGCATTCTATGGGATGTGAACTGCGTGGCGAAGCCCTCGGAAGTTCTGGCAGTTGTTGGTCCAAGTGGGGCTGGAAAATCATCCCTTCTTGAGATTCTTGCTGGCAAAGTTCGTCCAACAAAAGGGTCTATCTTGTTGAACCAGAAACCTGTAGATAAAGCTCAGTTCAGGAAGATTTCAGGGTATGTAACACAAAAGGATATCTTATTTCCATTACTTACGGTTGAAGAAACATTGATGTTTAGTGCAAAGTTGAGGCTAAATCTTCCCAAGCAACAAGTATGCTCCAGGGTGAAGTCATTGATTGAGGAACTTGGTCTTGGCCATGTTGCTAGGACTAGAGTCGGAGATGAAAGGGTTCGTGGAATATCCGGTGGTGAGAAGCGCCGAGTTTCAATTGCCATAGAAGTAGTACATGATCCAAAAGTGCTGATTCTTGATGAACCAACTTCAGGCCTTGACAGTACTAGTGCAATGCAGATAATTGGTATGCTTAAAGTCATGTCCGAATCGAGGGGACGAACTATAATCCTCAGTATCCATCAACCTGGGTTCAGAATAGTGAAGATGTTCAATTCAATATTGTTGTTAGCCAATGGCTCTGTGCTGCACCATGGCACTGTGGATTTGCTAGGTGTGAATCTAAGGTTAATGGGTTTAGAGCTTCCTCTTCATGTTAATGTAGTTGAGTTTGCCATTGAGTCCATTGAGACCATTCAGCAGCAACAAAGATGTGAAGAAGATTGGCAACAAGTGCCGCAAAGATTGCGAGGAACTGCGCAACGGAAGAAACGCAATGACCAAGGCGAGAGTAGAAGTGGAAGGTTTACTCTGCAGCAGCTCTTTCAACAATCCAAGGTAACTGATGTTGGAATGATCAATGAGGAAATGGATTTCACTTGTGAGTTTGCTAATTCTAGATTGAGAGAAATTATAGTCCTCACTCATAGGTTTGCCAAAATCATCTTCCGCACAAAGGAGCTCTTCGGGTGTAGGACAATTCAGATGCTGATTTCTGGTCTGGTTTTAGGTTCTGTCTTTTGTCATCTCAAGGATGGTCTAGAAGGAGCACAAGAAAGGGTTGGCCTAAACAGGAACTTCGCGGCGTTCTTGAACTTCTTGTTGATAATTTGGCTAATTCTTTACACGGCGAATTCCGTGGTGGTTTGCTTCAGTGCTCTGGTGCCAAACTTCATTGTTGGGAATGCAGTGATTTCTGGTGTCATTGGTTCATTCTTCTTGTTCTCTGGTTACTTCATATCAAAAAATGAGATTCCTAAGTACTGGATTTTCATGCATTATGTGTCTCTATACAAGTATCCTTTTGAAGGCTTTCTAATAAATGAGTTCTCCAACACAAAGAAGTGCTTGGAGTACATGTTTGGGGCATGTTTGGTTATTTTCTTATGTATTTCTTAG 1608 0.4235 MKNQGCQVEAIGINYKICTGTTEQTFKIFRKPPQLNNEDDGEEPEPEEEARNDDQSSMCNRVRRILWDVNCVAKPSEVLAVVGPSGAGKSSLLEILAGKVRPTKGSILLNQKPVDKAQFRKISGYVTQKDILFPLLTVEETLMFSAKLRLNLPKQQVCSRVKSLIEELGLGHVARTRVGDERVRGISGGEKRRVSIAIEVVHDPKVLILDEPTSGLDSTSAMQIIGMLKVMSESRGRTIILSIHQPGFRIVKMFNSILLLANGSVLHHGTVDLLGVNLRLMGLELPLHVNVVEFAIESIETIQQQQRCEEDWQQVPQRLRGTAQRKKRNDQGESRSGRFTLQQLFQQSKVTDVGMINEEMDFTCEFANSRLREIIVLTHRFAKIIFRTKELFGCRTIQMLISGLVLGSVFCHLKDGLEGAQERVGLNRNFAAFLNFLLIIWLILYTANSVVVCFSALVPNFIVGNAVISGVIGSFFLFSGYFISKNEIPKYWIFMHYVSLYKYPFEGFLINEFSNTKKCLEYMFGACLVIFLCIS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60475g00001 535 Pfam ABC-2 type transporter 244 392 IPR043926 GO:0140359
Stsc60475g00001 535 Gene3D - 54 330 IPR027417 -
Stsc60475g00001 535 Pfam ABC transporter 68 214 IPR003439 GO:0005524
Stsc60475g00001 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 273 IPR027417 -
Stsc60475g00001 535 MobiDBLite consensus disorder prediction 30 56 - -
Stsc60475g00001 535 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524|GO:0016887
Stsc60475g00001 535 Pfam ABC-2 type transporter 424 513 IPR013525 GO:0016020|GO:0140359
Stsc60475g00001 535 FunFam ABC transporter G family member 5 51 311 - -
Stsc60475g00001 535 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 50 287 IPR003439 GO:0005524
Stsc60475g00001 535 SMART AAA_5 75 264 IPR003593 GO:0016887
Stsc60475g00001 535 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 424 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60475g00001 Stsc-Chr60475 3333 5292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60475g00001 71 298 Calmodulin-binding Proteins AT2G36910 28.279 4.39e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60475g00001 K05681 - gmx:121172640 633.254