Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60474g00006 ATGGCCCTCCTTGCACTCTTGCCTGAACACTCCCTTCCCAAGAACAATGCTAAACTCAATAATAATAAGAAGCAGAAGAAACAGAAGCCGAAGCAGAGAGAAAAACAGAGTTCTTCTTCTTCATGGGAGCAAATCAAGAACTTGATATCTTGCAAACAAGTTGAAGGGTCAAGAGTGCATGATCCTTCATCAAAGACGACGATGATGGGCTCATCTTGCAGCTCCATATGCAGCTTCAGAGATGTTGTTCATGGAAACACCAGAGTTGTTCATAGACCTGATAACTCTTCACCTGAGAGCAGCTCTCTTGGCCAAGAAACTGGTTTGTTGACTAGAAAACCTGCCATCTCCAAATCATCTAGAAGGTCTTCATCTGGGAAACCCAATAATAACAATGGTGGATCATCTTCTAGAGGGATGCAATTCAGGAAGCTCTCTGGTTGTTATGAATGTCACATGATCATTGACCCTACCAGGCTACCAATTCCAAGGAGCAGTGTGTGTGCTTGTTCTCAGTGTGGAGAGGTCTTCCCTAAGATGGAAAGCTTAGAGCTTCATCAAGCTCTTCGTCATGCTGTTTCAGAGCTGGGTCCAGAGGATTCAGGGAGGAACATAGTGGAAATAATATTCAAATCAAGCTGGCTAAAGAAGGACAACTCCATATGCAAGATCGAACGGATACTAAAGGTCCACAACACTCAACGCACCATCCAACGGTTCGAGGACTGCAGGGACACCGTAAAGTCGCGTGCAGTGAATAGTAGCAAGAAAAACCCCAGGTGCGCGGCGGATGGGAATGAACTGCTGAGGTTCCATTGCACCACCTTGAGCTGCGCACTTGGGGCTCAATCATCCACCTCCCTTTGCACTTCTATTCCTGGTTGTGGCGTATGCACTATCATAAGGCATGGGTTTCAAGGCAAGTCTGGTTGTGGCGGAGAGGGTGGAAAGGGGGTGAAGACCACGGCAAGTAGCGGTAGGGCGCATGACTCGGTGGTGGCGGGCGAAGGTAATGGTAGTGGTGGGCGAAGGGCAATGTTGGTTTGTCGTGTGATTGCTGGGAGGGTTAGGCGTGTGGCAGAGGAGGCGGCGCCGGAGGAGGATGGTGTCTCGGCTAGTGGTAGTGGGGGCTATGATTCTGTTGCGGGGTGTGCCGGGATCTATTCTAGTCTTGAAGAATTGGTTGTTTTCAACCCAAGGGCTATCTTACCCTGTTTTGTGGTTGTTTACAAGGTTCTTTCTTGTTGA 1248 0.4856 MALLALLPEHSLPKNNAKLNNNKKQKKQKPKQREKQSSSSSWEQIKNLISCKQVEGSRVHDPSSKTTMMGSSCSSICSFRDVVHGNTRVVHRPDNSSPESSSLGQETGLLTRKPAISKSSRRSSSGKPNNNNGGSSSRGMQFRKLSGCYECHMIIDPTRLPIPRSSVCACSQCGEVFPKMESLELHQALRHAVSELGPEDSGRNIVEIIFKSSWLKKDNSICKIERILKVHNTQRTIQRFEDCRDTVKSRAVNSSKKNPRCAADGNELLRFHCTTLSCALGAQSSTSLCTSIPGCGVCTIIRHGFQGKSGCGGEGGKGVKTTASSGRAHDSVVAGEGNGSGGRRAMLVCRVIAGRVRRVAEEAAPEEDGVSASGSGGYDSVAGCAGIYSSLEELVVFNPRAILPCFVVVYKVLSC 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60474g00006 415 Gene3D - 192 412 - -
Stsc60474g00006 415 MobiDBLite consensus disorder prediction 35 51 - -
Stsc60474g00006 415 MobiDBLite consensus disorder prediction 90 139 - -
Stsc60474g00006 415 FunFam C2H2-like zinc finger protein 192 411 - -
Stsc60474g00006 415 SUPERFAMILY ADP-ribosylation 193 411 - -
Stsc60474g00006 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 196 IPR013087 -
Stsc60474g00006 415 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 40 410 - -
Stsc60474g00006 415 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Stsc60474g00006 415 MobiDBLite consensus disorder prediction 89 139 - -
Stsc60474g00006 415 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60474g00006 Stsc-Chr60474 21433 24667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60474g00006 1 413 C2H2 Transcription Factor Family AT1G75710 57.725 7.33e-172 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60474g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60474g00006 - - aprc:113874200 550.821