Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60473g00021 ATGGCTAACGGGTTTGAGGAATCAACAACAACAGCAACAACAAGGCTGAGAAGAGAGTCAAATCCCAGCGCATCTTGCTCTGGGAACAATGGTTCTAATGATGCTGGTGATTTTGAATGCAATATATGCTTTGATTTGGCTCAAGATCCAGTGATCACACTCTGTGGACACCTATTCTGCTGGCCATGCCTTTATAGGTGGCTGCATCATCACTCTCAATGTCAAGAGTGCCCTGTTTGCAAGGCCCTTATTCAAGAAGAGAAGCTGGTTCCTCTTTATGGCAGGGGTAAAACCCAGACTGACCCTAGGACTAAGACTTATCCTGGAATGGAGGTTCCTCGCCGTCCATCCGGCCAGAGGCCGGAGACAGCACCACAACCGCCACCCCAACAGCCAGGGCCTAATTTGTTCGGGAATTATGGGTTTGGCTTGATGGGTGGATTTATACCTATGGCCACAGCGACATTTGGGAACTTCACATTGTCCACTGCTTTTGGGGGCTTTATCCCATCACTACTTAACATTCAATTCCAACCATTTCATGATGCCACTGTCTATGGAACAACTTTTGGGTACCCATTTGGTTTTACTTCACATCAAGGTGGTAATGCTCGAGGTTTTTCGCAGGCAGCAACAGGTCAAGAGTTGAGGCCTGAGGACAATGCTCTAAAGAATCTTCTTTTGTTGATTGGTTTGCTCGTACTTCTCACCGTGATTTTTGTGTTGTAA 729 0.4664 MANGFEESTTTATTRLRRESNPSASCSGNNGSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKTQTDPRTKTYPGMEVPRRPSGQRPETAPQPPPQQPGPNLFGNYGFGLMGGFIPMATATFGNFTLSTAFGGFIPSLLNIQFQPFHDATVYGTTFGYPFGFTSHQGGNARGFSQAATGQELRPEDNALKNLLLLIGLLVLLTVIFVL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60473g00021 242 ProSitePatterns Zinc finger RING-type signature. 55 64 IPR017907 -
Stsc60473g00021 242 Pfam Zinc finger, C3HC4 type (RING finger) 39 80 - -
Stsc60473g00021 242 MobiDBLite consensus disorder prediction 94 133 - -
Stsc60473g00021 242 SMART ring_2 40 80 IPR001841 -
Stsc60473g00021 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc60473g00021 242 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 23 94 - -
Stsc60473g00021 242 CDD RING-HC_AtRMA-like 38 82 - -
Stsc60473g00021 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 104 IPR013083 -
Stsc60473g00021 242 MobiDBLite consensus disorder prediction 1 29 - -
Stsc60473g00021 242 SUPERFAMILY RING/U-box 36 93 - -
Stsc60473g00021 242 ProSiteProfiles Zinc finger RING-type profile. 40 81 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60473g00021 Stsc-Chr60473 139989 141359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60473g00021 29 240 C3H Transcription Factor Family AT2G23780 58.824 9.43e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60473g00021 K10666 - gmx:100814783 342.813