Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60473g00003 ATGATGAGGCTGAAGACATATGCTGGTCTCAGTTTGATTGCAACTCTGGCAATCACATATCATGCATTCAACAGTAGAGGCCAGTTTTATCCGGCAATGGTGTATCTTTCAACTTCCAAGATCAGCTTAGTGCTTCTTCTCAACATGGGTTTGGTTATTATGTGTATTCTATGGCAGTTGACTAAGAAAGTATTCCTTGGTTCGCTTAGAGAGGCTGAGGTAGAAAGGCTTAATGAGCAATCGTGGAGGGAGGTTATGGAAATCCTCTTTGCCATTACCATTTTTAGGCAGGATTTCTCGGTTACATTTCTTGCGATGGTCACTGCGCTGTTGTTGATTAAAGCTTTGCATTGGTTGGCTCAAAAGAGGGTTGAGTACATTGAGACCACTCCCACAGTGCCCATGTTGTCGCATGTTCGAATTGTATCTTTTATGGGTTTCCTTCTTCTCCTAGACAGCCTGTTCTTATACAGTAATCTGAAGCATCTGCTACAAACATGGCAACCGTCAGTTTCGATATTCTTTTCTTTTGAGTACATGATACTAGCAACAACAACAGTGTCGATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTCATGGAAGGACAATGGGAAAGGAAACCCGTCTTCACATTCTACTTGGAACTTATCAGAGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTCCTTGTAATTTTCGTAAACTACGGTGTTCCTTTGCACTTAATACGGGAGCTCTATGAGACATTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGATATCGTAAGATCACTTCAAATATGAACGACCGTTTCCCAGATGCAACGCCTGAAGAGCTTAACGCAAGTGATGCAACCTGCATTATCTGCCGTGAGGAGATGACTACTGCCAAGAAACTTATATGTGGACATCTGTTTCATGTTCATTGCCTGCGATCATGGCTGGAGCGGCAACATACTTGCCCTACCTGCAGAGCCCTGGTTGTTCCCCCGGAAAATGGGGCAACAACAACTGGAGGCCAGCAAGGAGCACAATCAGACGCTCATCGACAGGGAACTGGGACCAGCACTGGAAGCACAGCTCAAAATGAGGTTGGCAGTGGTGGCGCGACTGATAATTTGAGTCAGCGTCAAGCCAGACTTCAAGCTGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTTTATCCCTCCGCGACATCTTTAGTATGCTCTCCTGGGTACACTCTTCAACCCCCAGTTCAAATGTCTATGGGTGAATCTGTTAACCCGGCACTCAATGGTGAACAAGCTTCCAGTGAACAGGCACATAACCAGTTTATTTTCCCTGGTGGGCCAATTATATCCTTTCCTCAGGGGCACTTCCATTTTCTTCCTTCCCAAACACATGCAGCCTCTGCGAATCATGGAGTGGAGTTTGGAGTTGATTCCAATATGCCAAGCTCTCACCTGGAAGCGCATAAAAAACTACTTCAATATCAGATTGAGATTCTACAAAATCAGCTCCAGCTTCTCCAGAGGACAAAGGTTGAAGAAAGTATAGATGAGGGTGCACCATCTTCTTCTTCTACTTCTTCTTCTTCGTCGTCAGATAGCAGAGGCAAGCAAATAGCATCAAGTCATGAGATCCATCCTGAAAAAGAATAA 1668 0.44 MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPMLSHVRIVSFMGFLLLLDSLFLYSNLKHLLQTWQPSVSIFFSFEYMILATTTVSIFVKYIFYVSDMLMEGQWERKPVFTFYLELIRDLLHLSMYLCFFLVIFVNYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGATTTGGQQGAQSDAHRQGTGTSTGSTAQNEVGSGGATDNLSQRQARLQAAAAAAASIYEKSYVYPSATSLVCSPGYTLQPPVQMSMGESVNPALNGEQASSEQAHNQFIFPGGPIISFPQGHFHFLPSQTHAASANHGVEFGVDSNMPSSHLEAHKKLLQYQIEILQNQLQLLQRTKVEESIDEGAPSSSSTSSSSSSDSRGKQIASSHEIHPEKE 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60473g00003 555 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Stsc60473g00003 555 PANTHER RING ZINC FINGER PROTEIN 1 533 - -
Stsc60473g00003 555 Pfam Ring finger domain 291 330 IPR001841 -
Stsc60473g00003 555 MobiDBLite consensus disorder prediction 522 543 - -
Stsc60473g00003 555 MobiDBLite consensus disorder prediction 518 555 - -
Stsc60473g00003 555 MobiDBLite consensus disorder prediction 339 377 - -
Stsc60473g00003 555 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Stsc60473g00003 555 SMART ring_2 292 329 IPR001841 -
Stsc60473g00003 555 CDD RING-H2_synoviolin 289 330 - -
Stsc60473g00003 555 SUPERFAMILY RING/U-box 272 336 - -
Stsc60473g00003 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Stsc60473g00003 555 Coils Coil 495 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60473g00003 Stsc-Chr60473 16083 20920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60473g00003 1 549 C3H Transcription Factor Family AT3G16090 62.749 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60473g00003 K10601 - gmx:100816441 837.795