Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60472g00022 ATGGCAGCTGATGCTATGAGAAATATCAAGATAGCTTATAGAGTATCAAAAAATTGGCAAGGAGATCCATGCGCCCCTGTAGCGTACACATGGGATGGTCTAAATTGTAGTTCAATTGGTACTCTAAAAATCACATCCTTGAATTTATCTTCCAATGGACTAACAGGACAAATTGTATCTTACATCTCCATGCTTACTGACTTAGAATCCTTGGATTTATCAAATAATAGCTTAAGCGGGGAGATACCTGATTTTCTTGCAGAACTGTCGTCACTTAAAATCCTGAACTTGCGGAATAACCACCTCACAGGTCAAGTTCCAAATGCACTTCTCCAAAGATCAAGCGATGGTGTACTATCACTAAGCTTGGAGAAAAATCCATGTGAATCTGCTCTTTGTGACCAACAGACAAAGGATAAAAGCAAGAAAAATAATACAGTTATTTATATCCTAGCGTCTGTTTCTGCAATTCTGGTGCTCCTACTATTAGTTCTTGCAGCAGTTAACATCTTCATTTACATTAAAAAGAGAAAGCCAAGAGATTATTTCAAAGTTCTTAAGCAGTCTAGTGATCAAACTGAATCAGAGTTGGAATCTAAGCGAAGACGGTATTCATTCAAAGAAGTATCTAACATGACCAATAATTTCGAAAGAATTCTCGGTAGAGGCGGATTTGGAACGGTTTACTATGGCATTATTGATGACATTCAAGTAGCTGTCAAGATGCTTTCTCAATCATCAGTACAAGGATATCAGCAATTTCTAGCAGAGGTCAATCTTCTGATGAGGGTTCATCATAGGAATCTAACTTGTCTCATTGGATATTGCAATGAAGAAGCCAACATAGCACTCATCTATGAATATATGGTAAATGGCAACTTAGAGGAACATCTTTTGGAGAAAAATAGTAGGGCAAAGTTGTTCAGTTGGGAAGAAAGGCTCAACATAGCCATGGATGCAGCCCAAGGTTAA 972 0.3786 MAADAMRNIKIAYRVSKNWQGDPCAPVAYTWDGLNCSSIGTLKITSLNLSSNGLTGQIVSYISMLTDLESLDLSNNSLSGEIPDFLAELSSLKILNLRNNHLTGQVPNALLQRSSDGVLSLSLEKNPCESALCDQQTKDKSKKNNTVIYILASVSAILVLLLLVLAAVNIFIYIKKRKPRDYFKVLKQSSDQTESELESKRRRYSFKEVSNMTNNFERILGRGGFGTVYYGIIDDIQVAVKMLSQSSVQGYQQFLAEVNLLMRVHHRNLTCLIGYCNEEANIALIYEYMVNGNLEEHLLEKNSRAKLFSWEERLNIAMDAAQG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60472g00022 323 Gene3D Transferase(Phosphotransferase) domain 1 194 323 - -
Stsc60472g00022 323 PRINTS Leucine-rich repeat signature 68 81 - -
Stsc60472g00022 323 PRINTS Leucine-rich repeat signature 89 102 - -
Stsc60472g00022 323 ProSiteProfiles Leucine-rich repeat profile. 67 89 IPR001611 GO:0005515
Stsc60472g00022 323 PANTHER OS07G0107800 PROTEIN-RELATED 3 323 - -
Stsc60472g00022 323 ProSiteProfiles Protein kinase domain profile. 214 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60472g00022 323 FunFam Leucine-rich repeat receptor-like protein kinase 190 288 - -
Stsc60472g00022 323 SUPERFAMILY Protein kinase-like (PK-like) 193 323 IPR011009 -
Stsc60472g00022 323 SMART tyrkin_6 214 323 IPR020635 GO:0004713|GO:0006468
Stsc60472g00022 323 Pfam Protein tyrosine and serine/threonine kinase 216 323 IPR001245 GO:0004672|GO:0006468
Stsc60472g00022 323 FunFam Leucine-rich repeat receptor-like kinase 2 130 - -
Stsc60472g00022 323 Gene3D Ribonuclease Inhibitor 4 123 IPR032675 -
Stsc60472g00022 323 SUPERFAMILY L domain-like 28 115 - -
Stsc60472g00022 323 ProSitePatterns Protein kinases ATP-binding region signature. 220 241 IPR017441 GO:0005524
Stsc60472g00022 323 Pfam Leucine rich repeat 44 102 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60472g00022 Stsc-Chr60472 156915 158803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60472g00022 4 323 Receptor kinase-like Gene Family AT2G19210 50.000 2.40e-97 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc60472g00022 PK_Tyr_Ser-Thr 3.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60472g00022 - - ahf:112712814 523.857