Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60472g00020 ATGAAGTCCGTTGATCCGTTGGAATCTAAGCGCCGACAATACTCATTCGATGAAGTTGTTAACATGACGAATAACTTCGACAGAATTCTGGGTAGAGGTGGATTTGGAACAGTTTACTATGGCATCATTGATGACATTCCAGTAGCTGTCAAGATGCTTTTGCAATCATCGGTGCAAGGATATCAACAATTTCTAGCAGAGGTTAAATTTCTTATGAGGGTTCACCACAGAAACCTGACTTCTCTCATTGGATACTGCAATGAAGACAACAACATAGGCCTCATCTATGAATATATGGCAAATGGGAACCTAAATGAACATCTTTTAGGAAAAACCAACAGGACAAAGTTCTTGACTTGGGAGGATAGACTCCAAATAGCAGTGGATGTAGCCCAAGGATTGGAGTATCTGCATAGCGGTTGCAAGCCACCAATAATTCACAGAGATATAAAATGTGCAAACATTTTGTTAAATGAAAACTTTCAAGCAAAATTGGCTGATTTAGGTTTGTCCAAAAGCTTCATCATTAGCGGAGACACACACGTGTCCACTACTGTTGCTGGAACTCCTGGCTACCTTGATCCAGAGTACCAAAAAACAAACAAATTAACGGAGAAAAGTGATGTGTATAGTTTTGGGGTAGTACTCTTGAAAATAATAACAGGTCAAGCAGCAACACCATCAAAAGCACGTAACAATGCTCACATAAGTGAGTGGGTGGGTTCAGTGGTTGCAAGAGGGGACATAGAAGGTATTGTAGAGCCAAGATTAGAAAGAGATTTCGACATTTATTCAGCATGGAAAGCAGTTGAAATAGCAATGGCATGTGTCTCCATTAATTCTAAAGAAAGGCCATACATGAGAGATGTTGTGGTGGAGCTAAAGGAGTGTTTGGCCGTGGAATCAGCTAGAAAAAACGTTGGAGCCAAAGATTCAAATGAGTTGGTCACCATGAATTTGGTTACTGAAATTATTCCAGTAGCTAGGTAG 990 0.402 MKSVDPLESKRRQYSFDEVVNMTNNFDRILGRGGFGTVYYGIIDDIPVAVKMLLQSSVQGYQQFLAEVKFLMRVHHRNLTSLIGYCNEDNNIGLIYEYMANGNLNEHLLGKTNRTKFLTWEDRLQIAVDVAQGLEYLHSGCKPPIIHRDIKCANILLNENFQAKLADLGLSKSFIISGDTHVSTTVAGTPGYLDPEYQKTNKLTEKSDVYSFGVVLLKIITGQAATPSKARNNAHISEWVGSVVARGDIEGIVEPRLERDFDIYSAWKAVEIAMACVSINSKERPYMRDVVVELKECLAVESARKNVGAKDSNELVTMNLVTEIIPVAR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60472g00020 329 CDD STKc_IRAK 30 296 - -
Stsc60472g00020 329 SUPERFAMILY Protein kinase-like (PK-like) 9 294 IPR011009 -
Stsc60472g00020 329 ProSiteProfiles Protein kinase domain profile. 24 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60472g00020 329 PIRSF TyrPK_CSF1-R 264 320 - -
Stsc60472g00020 329 PIRSF TyrPK_CSF1-R 21 118 - -
Stsc60472g00020 329 PIRSF TyrPK_CSF1-R 109 230 - -
Stsc60472g00020 329 FunFam Leucine-rich repeat receptor-like protein kinase 2 98 - -
Stsc60472g00020 329 Gene3D Phosphorylase Kinase; domain 1 11 98 - -
Stsc60472g00020 329 Pfam Protein tyrosine and serine/threonine kinase 26 292 IPR001245 GO:0004672|GO:0006468
Stsc60472g00020 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Stsc60472g00020 329 ProSitePatterns Protein kinases ATP-binding region signature. 30 51 IPR017441 GO:0005524
Stsc60472g00020 329 Gene3D Transferase(Phosphotransferase) domain 1 99 321 - -
Stsc60472g00020 329 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 99 307 - -
Stsc60472g00020 329 PANTHER OS07G0107800 PROTEIN-RELATED 9 301 - -
Stsc60472g00020 329 SMART serkin_6 24 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60472g00020 Stsc-Chr60472 146183 150812 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60472g00020 2 329 Receptor kinase-like Gene Family AT1G51820 56.886 6.87e-134 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc60472g00020 PK_Tyr_Ser-Thr 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60472g00020 - - ahf:112712814 461.84