Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60471g00013 ATGGGTTATTATCTTTCCTATGTTATTGTGTTGCTCTTGTTCATTTCTTTGGGAGTTTCAGTTCCCTTATCTTCTTCACAAATTGAAGATCAGAAGAGATATAGGGTCACTGGTTTGCCAGGGCAACCCAGTAATGTGGGGTTTGCTCAGTATTCTGGCTATGTCACTGTGAATGAGCAGAGTGGGAGTGCATTGTTCTACTGGCTCTTTGAGGCTCCGGCGAGCCGCCGACCGGAGTTGAGACCACTGGTTTTGTGGCTCAACGGTGGCCCTGGATGCTCCTCCATTGCTTATGGTGCATCTGAAGAAATTGGCCCTTTTAGGATTAGGCCTGATGGGAAGACACTTTACTTGAACCCTTATGCTTGGAACAAATTGGCAAATATACTGTTCCTTGATTCCCCTGCCGGTGTCGGATTTTCGTACACGAATAAAACGACCGATCTGTACACATTTGGTGACCAGAGAACAGCTGAAGATGCATATATGTTTCTTGTTAAGTGGTTTGAGAGATTTCCTCAGTATAAGCACAGGGAGTTCTACATTGCTGGAGAAAGCTATGCAGGGCATTATGTTCCTCAGTTGTCTAAAATTGTTCATGAGAGGAACAAGGGAATCAAGAATCCAGTCATAAATTTCAAGGGATTTATGGTTGGAAATGGTGTTACTGATGATTACCATGATTATATTGGAACATTTGAGTATTGGTGGACACATGGTTTGGTATCGGATTCGACATACAGGATGCTGAGAATTGCTTGTGATTTCGGTTCCTCACAGCATCCATCAGTGCCTTGCATGCAGGCTCTTAAAATTGCAGTTGTGGAGCAGGGTAACATTGACCCTTACAGCATTTACACCCAGCCTTGTAATGATACATCGTCACTCAGACGCGACTTAGGGGGTCGCTATCCGTGGATGTCCCGAGCATACGATCCCTGCACCGAGAGGTATTCCGACTTGTATTTCAATCACCCAGAAGTTCAGAAGGCACTTCATGCCAATGTAACCGGAATTCCTTATTCATGGAAGACTTGCAGTGATATTGTGGGGAACTATTGGACTGATTCTCCTCTAACTATGCTCCCTATATATCATGAACTTATTAATGCTGGTCTCAAGATATGGGTATACAGTGGGGACACTGATTCAGTGGTTCCAGTCACCGCAACTCGATATTCGATCGATGCATTGAAGCTACCAACACTCATCAACTGGTACCCTTGGTATGATAACGGCAAGGTTGGTGGTTGGAGTCAAGTTTACAAAGGACTGACATTTGTAACGGTAAGAGGAGCCGGACATGAGGTTCCGCTTCATCGGCCGCGCCAAGCCTTCATTCTTTTCAGGTCTTTCTTGGAGGACAAGCCAATGCCATCTTCAAGTTAG 1389 0.4492 MGYYLSYVIVLLLFISLGVSVPLSSSQIEDQKRYRVTGLPGQPSNVGFAQYSGYVTVNEQSGSALFYWLFEAPASRRPELRPLVLWLNGGPGCSSIAYGASEEIGPFRIRPDGKTLYLNPYAWNKLANILFLDSPAGVGFSYTNKTTDLYTFGDQRTAEDAYMFLVKWFERFPQYKHREFYIAGESYAGHYVPQLSKIVHERNKGIKNPVINFKGFMVGNGVTDDYHDYIGTFEYWWTHGLVSDSTYRMLRIACDFGSSQHPSVPCMQALKIAVVEQGNIDPYSIYTQPCNDTSSLRRDLGGRYPWMSRAYDPCTERYSDLYFNHPEVQKALHANVTGIPYSWKTCSDIVGNYWTDSPLTMLPIYHELINAGLKIWVYSGDTDSVVPVTATRYSIDALKLPTLINWYPWYDNGKVGGWSQVYKGLTFVTVRGAGHEVPLHRPRQAFILFRSFLEDKPMPSSS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60471g00013 462 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Stsc60471g00013 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 442 IPR001563 GO:0004185|GO:0006508
Stsc60471g00013 462 SUPERFAMILY alpha/beta-Hydrolases 31 459 IPR029058 -
Stsc60471g00013 462 Gene3D - 361 454 - -
Stsc60471g00013 462 Gene3D alpha/beta hydrolase 31 292 IPR029058 -
Stsc60471g00013 462 Gene3D - 314 350 - -
Stsc60471g00013 462 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185
Stsc60471g00013 462 FunFam Carboxypeptidase 30 292 - -
Stsc60471g00013 462 FunFam Carboxypeptidase 361 455 - -
Stsc60471g00013 462 FunFam Carboxypeptidase 311 458 - -
Stsc60471g00013 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Stsc60471g00013 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Stsc60471g00013 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Stsc60471g00013 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Stsc60471g00013 462 Pfam Serine carboxypeptidase 40 454 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60471g00013 Stsc-Chr60471 95569 98916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60471g00013 324 458 Calmodulin-binding Proteins AT2G22960 27.941 4.73e-14 68.6