Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60471g00002 ATGGCGGCATGGAAGAGAAGGATCAATAATGGAGAACAAAAGGTGAGAGAACATGGAAACCAAAGCTGGAGTGAGAAAAATTCATTTGCTGTTTTTGTCGACAACCTTCCTATTGACTCCACCAAGGAATGGTTATGGAGGGTGTTTAGCAGTGTTGGGGAAGTGGTGGACATATACCTCTCGAGGAAGACAAGAGAGAAGAATCCACTGAGATTTTCCTTTGTTAGATACGTTACAAGAAGAGAGGCCATGAGAGCGATTCAACAACTTGATGGTTGGATAGTATGGGGGCATAGTTTAAGATTGATGGAATCAAAATATAGAAGGGGAGCTAAAGGTAGGCAGGAAAAGACAAGAAAAGAAGAAGAAGACAATGGAGGCCATGAGGAGCGGACAGGATGCCGAAAGGCGAGGATTGCAAAGTGCAGGGAGCTTTGA 438 0.4406 MAAWKRRINNGEQKVREHGNQSWSEKNSFAVFVDNLPIDSTKEWLWRVFSSVGEVVDIYLSRKTREKNPLRFSFVRYVTRREAMRAIQQLDGWIVWGHSLRLMESKYRRGAKGRQEKTRKEEEDNGGHEERTGCRKARIAKCREL 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60471g00002 145 MobiDBLite consensus disorder prediction 1 21 - -
Stsc60471g00002 145 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 8 133 - -
Stsc60471g00002 145 CDD RRM_SF 31 103 - -
Stsc60471g00002 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 99 IPR000504 GO:0003723
Stsc60471g00002 145 SMART rrm1_1 30 103 IPR000504 GO:0003723
Stsc60471g00002 145 Gene3D - 4 139 IPR012677 -
Stsc60471g00002 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Stsc60471g00002 145 MobiDBLite consensus disorder prediction 107 134 - -
Stsc60471g00002 145 SUPERFAMILY RNA-binding domain, RBD 20 113 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60471g00002 Stsc-Chr60471 7874 10217 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60471g00002 25 105 Eukaryotic Initiation Factors Gene Family AT1G49760 25.926 1.37e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60471g00002 - K12891 adu:107484100 80.4925