Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60470g00036 ATGGTGAGGGTTAGTGTTTTGAACGATGCTCTGAAGAGCATGTACAATGCTGAGAAAAGAGGGAAGCGTCAAGTGATGATTAGGCCTTCCTCCAAAGTTATTGTCAAGTTCCTTATTGTCATGCAGAAGCACGGATACATTGGAGAGTTTGAGTATGTTGATGACCATAGGGCTGGCAAAATCGTCGTCGAATTGAACGGCAGGCTTAACAAGTGCGGTGTTATCAGTCCACGCTTCGATGTCGGTGTTAAAGAGATCGAAAGTTGGACTGCTAGACTCCTCCCCTCAAGACAGGTCAGCTATGTTGGTTCATTGTGA 318 0.456 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIVKFLIVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQVSYVGSL 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60470g00036 105 SUPERFAMILY Ribosomal protein S8 4 100 IPR035987 GO:0003735|GO:0005840|GO:0006412
Stsc60470g00036 105 FunFam 40S ribosomal protein S15a 1 69 - -
Stsc60470g00036 105 Gene3D - 1 69 - -
Stsc60470g00036 105 Pfam Ribosomal protein S8 7 95 IPR000630 GO:0003735|GO:0005840|GO:0006412
Stsc60470g00036 105 Gene3D - 70 102 - -
Stsc60470g00036 105 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 102 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60470g00036 Stsc-Chr60470 158755 160136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60470g00036 1 102 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 93.137 3.05e-69 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60470g00036 K02957 - zof:122040235 198.749