Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60470g00025 ATGATGATGACATTATGTGGATGCAAGCCCCTACTCATGACCACCATGGAGTCTCTCTTCCATCAACCACTCACCACCAACGACAAGGTTGTTGTCGTCATGGGAGCCACCGGCACCGGCAAGTCCAAGCTAGCCATTGACATAGCCACGCACTTCAAACCCGCCGAGATTGTTAACTCGGACAAAATTCAAGTCTTCAAAGGCCTCAACATCACCACAAACAAAGTCACAGAGGAAGAGTCTCGCGGGGTCCCACATCACCTGCTTGGATTCATTGACCCAAACGCTCAAGACTTCACAGCCACACGATTCTGTGAAGAAGCAACGAGGGCCGTTGATTCGATCGTGGAGAGGGACGCTCTACCGGTAATTGCCGGTGGGTCTAACTCCTTCATAGAGCAGTTGGTGAACCAGCATGAGCAGTTCCGGTTAAGGTACAAGTGCTGCTTCCTCTGGGTGGACGTTTCTCTTCCGGTTCTCCATTCCTCTCTGGAAGACCGCGTTGACCGAATGGTTGAGTCTGGTCAAGTCAACGAAGTTCGCGAATTCTTTGACCCTTCCGGGGACTACTCGAGAGGGATTCGGAGGGCCATTGGAGTCCCTGAGTTTCACGAGTTTCTGAGAGCAGAGTCCATGGGAGCAGACGAGGCAACCAAGAAGAGGCTTCTAGAGGACGCCATTGCCACCATCAAGGTCAACAACTGCAAGCTCGCGAACCGCCAGTTACACAAGATTCAGCGCCTCCACGCCATGTGGAAGAGGAGCATGCACCGCCTCGACGCCACGGAGGCTTTTCTTAGCAAAGAAGAAGAAGCTTGGGAGGATCACGTGGTGAGCAAGGCTAGAAGGATCGTGCAGAGGTTCTTGTACGAGGAAGCTCATCATCAACATGTTCCGCCGCCGCTTGTGGTTGCGCCCACCGCCATGGCCGCGGTAACACATTAA 945 0.5333 MMMTLCGCKPLLMTTMESLFHQPLTTNDKVVVVMGATGTGKSKLAIDIATHFKPAEIVNSDKIQVFKGLNITTNKVTEEESRGVPHHLLGFIDPNAQDFTATRFCEEATRAVDSIVERDALPVIAGGSNSFIEQLVNQHEQFRLRYKCCFLWVDVSLPVLHSSLEDRVDRMVESGQVNEVREFFDPSGDYSRGIRRAIGVPEFHEFLRAESMGADEATKKRLLEDAIATIKVNNCKLANRQLHKIQRLHAMWKRSMHRLDATEAFLSKEEEAWEDHVVSKARRIVQRFLYEEAHHQHVPPPLVVAPTAMAAVTH 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60470g00025 314 Gene3D - 28 289 IPR027417 -
Stsc60470g00025 314 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 157 256 - -
Stsc60470g00025 314 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 28 289 IPR039657 -
Stsc60470g00025 314 FunFam Adenylate isopentenyltransferase 5, chloroplastic 157 256 - -
Stsc60470g00025 314 Pfam IPP transferase 141 243 - -
Stsc60470g00025 314 Pfam IPP transferase 64 139 - -
Stsc60470g00025 314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 186 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60470g00025 Stsc-Chr60470 109608 111529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60470g00025 145 299 C2H2 Transcription Factor Family AT2G27760 33.149 2.94e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60470g00025 K10760 - gmx:100812928 391.734