Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60470g00017 ATGGGAATCTCATGGAGCAACACCAACAGTAACAGTAACAGAAGAAGAAGAAACTCTTACCCACAACCTCTTCCTCCGACCTACTATTACTCTTCTGATCCTCACCATCCCCAACTCCCACCGCCACCTCCTCCTCCTCAGCCACCGCCTCCGCCCCCGCAAGGCTATTACTTTCCTCCTACAAACCCTCCCAGCACTGCCTACGTCGCTTCTCATCCTCTGCCACCTCCTCAGACCCATTCCTTCTATTACTCAAATGGCTATGCCACCCCCACCGCCGCTGCCGCCACCAGCGCTCCTAACTATGGCAATCGCGTTCACTACCACCCTTACTATGCAAATCAGGCTGCTCCAGCCTGGGGCCCTGTTCGTCCCCCCGTTGCTGCCGCCACCGCCGCACCGCCACCGCCCTATGTGGACCATCAAACCACTAAGAAGATTAGGAACGATGTGAACTTGCATAAAGACACCTTGCGGGTTGAGATTGATGAGCTGAACCCTGATCATCACTTGGTCTCTTTCGTTTTTGATGCCCTCTTTGATGGCAGAATTACTATCTACTACTTAGCCAAAGAAGAAGAAAAATGTAGGTTTATTCCACTATATCCCGATGCATTTGCACCAGTCACATTCCCCTTTCAAAAAGGAGTCGGCCAGAAATTTCGTCAGCCTACTGGAACAGGCATTGACCTTGGTTTCTTTGAGTTAGATGATCTTGCAAAGCCTTCGCCTGAAGAAGATGTGTTTCCCCTTGTAATATGTGCTGAAACAAGTTTGAGAACTTCTGAAGATGAAACTCCGGATGATTCCACAATTGATGCATCTCCTCACATGCAAATAACTCAAGCTGTCCTAGAGAAAAGCAACGGTATTGGTCATTTTGAGGTGAAAGTAATTAGGCAGATTCTCTGGATTGATGGAGTTCGATATGAGTTGAGAGAGCTATATGGAATAGGAAGTGGCTCAACAGCTGCAGATTTTGATGATAATGATCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCGAAGGACACTGCTGTCTTACCTTGCCGACATATGTGTATGTGCAGTGAGTGTGCAAAAGCATTACGGCTTCAATCCAATAAGTGCCCGATATGCCGCCAACCTATTGAGGAGCTCATGGAAATCAAGATAAACAATGATGACCAATGA 1176 0.4779 MGISWSNTNSNSNRRRRNSYPQPLPPTYYYSSDPHHPQLPPPPPPPQPPPPPPQGYYFPPTNPPSTAYVASHPLPPPQTHSFYYSNGYATPTAAAATSAPNYGNRVHYHPYYANQAAPAWGPVRPPVAAATAAPPPPYVDHQTTKKIRNDVNLHKDTLRVEIDELNPDHHLVSFVFDALFDGRITIYYLAKEEEKCRFIPLYPDAFAPVTFPFQKGVGQKFRQPTGTGIDLGFFELDDLAKPSPEEDVFPLVICAETSLRTSEDETPDDSTIDASPHMQITQAVLEKSNGIGHFEVKVIRQILWIDGVRYELRELYGIGSGSTAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPIEELMEIKINNDDQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60470g00017 391 CDD mRING-HC-C3HC5_MGRN1-like 334 375 IPR045195 -
Stsc60470g00017 391 FunFam probable E3 ubiquitin-protein ligase LOG2 320 385 - -
Stsc60470g00017 391 MobiDBLite consensus disorder prediction 1 26 - -
Stsc60470g00017 391 SUPERFAMILY RING/U-box 335 381 - -
Stsc60470g00017 391 SUPERFAMILY Formin homology 2 domain (FH2 domain) 41 52 - -
Stsc60470g00017 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 385 IPR013083 -
Stsc60470g00017 391 PANTHER MAHOGUNIN 1 385 IPR045194 GO:0061630
Stsc60470g00017 391 Pfam Zinc finger, C3HC4 type (RING finger) 334 380 - -
Stsc60470g00017 391 MobiDBLite consensus disorder prediction 1 73 - -
Stsc60470g00017 391 ProSiteProfiles Zinc finger RING-type profile. 336 375 IPR001841 -
Stsc60470g00017 391 MobiDBLite consensus disorder prediction 27 60 - -
Stsc60470g00017 391 SMART ring_2 336 374 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60470g00017 Stsc-Chr60470 64897 68220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60470g00017 101 391 C3H Transcription Factor Family AT3G06140 58.528 8.57e-119 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60470g00017 - - adu:107465273 650.973