Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60470g00008 ATGGCCACTTTCACTTCTTCTCTTCTCCTTTCACCTCCTTCACCCGACTTCTCCGATGACGCCTGCAGCATTTGTCTTGAACCATTCACCTTCGTCGACCCCGCCACTATTACCAATTGCAAACATGGTTATCATCTGCATTGTATTATTGAATGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAGTTACTTAGCTTAAAAGACCCCGCCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAAAGCTTACTATCAAGAAGTGAACATTCGTCTTCATTCACCAGCTCTCCTAGTTCCCTTGAACGACTCAATGATGATCATGATGATCCTTGTTCAGATGACTCTGATCTTGATGAGCAGCTTATGCAGCACCTTGTTACTGCTGCAAGCACAGATCGTCCTCTCCACAGACGAGAAAGGCACAGATATTCTGGTACAGGTCCATCTCAGGGTGGTGTATCATCATCTTCTGACGTTCAACCTCCAACTTCTGAGACTGAGGTCCCTTTCAAGCCCAGTTTTAGCTGGAAAAAACTTGGGAGTGCAAGGAGAGTGAACACTTCCGAAATGTTCTCCGTCCCAGACTCCATCAAGTCCAAATTTTCTGCTACTTCAGCAAGATATAAAGAATCAATTTCGAAAAGAACTCGAGGCCTTAAAGAGAAGTTGATTGCTCGAAATGCCTCAGTGAAAGAGCTCAGTAAAGGTGTTAAGCGTGAGATGAATGTAGGCATTGCTGGTGTTGCAAAGATGATTGAACGTCTTGATCTTTCGTCGAAACGTATCATCCCCGTCAAAGGGAAGTCTGTCCAACAGAATAATGCTATTGATGAGCAGCAACAATCTGGAGTTTTTGTTTGTCATATTAGTTCAGATTCTCCATCACTGGTTCCTCCTCCAAATGTTCAGAGTGAATAA 927 0.4423 MATFTSSLLLSPPSPDFSDDACSICLEPFTFVDPATITNCKHGYHLHCIIEWSQRSKECPICWQLLSLKDPASQELLAAVEAEKSLLSRSEHSSSFTSSPSSLERLNDDHDDPCSDDSDLDEQLMQHLVTAASTDRPLHRRERHRYSGTGPSQGGVSSSSDVQPPTSETEVPFKPSFSWKKLGSARRVNTSEMFSVPDSIKSKFSATSARYKESISKRTRGLKEKLIARNASVKELSKGVKREMNVGIAGVAKMIERLDLSSKRIIPVKGKSVQQNNAIDEQQQSGVFVCHISSDSPSLVPPPNVQSE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60470g00008 308 SMART ring_2 22 62 IPR001841 -
Stsc60470g00008 308 Pfam Ring finger domain 21 62 IPR001841 -
Stsc60470g00008 308 MobiDBLite consensus disorder prediction 89 173 - -
Stsc60470g00008 308 ProSiteProfiles Zinc finger RING-type profile. 22 62 IPR001841 -
Stsc60470g00008 308 MobiDBLite consensus disorder prediction 89 103 - -
Stsc60470g00008 308 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 18 71 - -
Stsc60470g00008 308 SUPERFAMILY RING/U-box 17 69 - -
Stsc60470g00008 308 MobiDBLite consensus disorder prediction 150 173 - -
Stsc60470g00008 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 92 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60470g00008 Stsc-Chr60470 18627 20586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60470g00008 3 62 C3H Transcription Factor Family AT4G00335 40.278 9.45e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60470g00008 K19043 - gmx:100785684 310.457