Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60470g00007 ATGTCCATGGAGACTCAGAGTTTCTCCCTCAAGCTCTGGCTCCCGCCATTTGTAACACCAACTGCAACTGTTTATCATTTGCCTCGCTTACGTAACCTCAATCGAACCTACCCTGCACCTCAATGCATTCTTCACTCCAACTTGACAGCTCCACAACCATCACTTCTCAACCATTCTCCCACCTTGCGAGATTTATGCCAGCCTCATGTCCCCACGCATCTATTGCAAAGGATGGAAGAGGTTGGATATGTGATTCCTACAGATGTTCAGAGGGAGGCTTTGCCTCATCTTTTCTCCGGCCGTGACTGTATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTACATACCTGCTTTTGATTTATTCCATTATCAACACTTCCAAATCTTCTGTGCAAGCGCTTGTTGTAGTCCCCACCCGTGAACTTGGCATGCAAGTTACTAAAGTTGCAAGGATGTTGGCAGCGAAGCCAACTGGAGTCGAGGGGGATCAGAAGTCATGTACCATCATGGCTCTCTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACAACTTTTCTTGCTTGAATCTGTGCGGGTGCTGATTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTTAGTTCTCTTAGAAAGCTTTTGACTTCGTATTCATCATGCAATAACCGTCAGACAGTTTTTGCGAGTGCATCTATACCACAGCACAGACGATTTCTTCACGATTGTGTGCAGCAAAAATGGACAAAGAGTGATGTGATCCATATACATGTCAGCCCAGTGGAGCCTATGCCTTCTCGCCTGTGTCATAGATTTATTATATGCAATAACAAAAGGAAACTACAAACCCTGTTATCCTTGATTCAATCTGATGCACCCGATTCTGGCATTATATTTGTTGGTGAACAGTCTGAGAAGTCCAAAAGGGCTGGAAATGCTCCATCGACATACCTTGTCATTGACTTTTTGAAGACATCATATGAAGGGCCTTTAGAGATTGTCCTTCTCGAGGATGACATGAATTTCAACTCGCGCGCAGTTTCATTGTTGGAGCTTCGAAAAGGAGGTGGATATCTGCTTGTAGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCTGAAATGTCTCATATCTACAACTTTGACTTGCCAAGGACTGCAATTGATTATCTTCATCGAGCAGGCAGGACTTGTAGAAAACCTTTTTCTGACATGAAATGTACTGTTACCAGCATTATAGTTCCCGAGGAGAGGTTTGTTCTGCATAAATATGAAAATGAGTTGATGTTTGACTCTGAGGAGCTTATTCCATAA 1389 0.4348 MSMETQSFSLKLWLPPFVTPTATVYHLPRLRNLNRTYPAPQCILHSNLTAPQPSLLNHSPTLRDLCQPHVPTHLLQRMEEVGYVIPTDVQREALPHLFSGRDCILHAQTGSGKTLTYLLLIYSIINTSKSSVQALVVVPTRELGMQVTKVARMLAAKPTGVEGDQKSCTIMALLDGGTLRRHKSWLKAEPPTIVVATVGSLCQMLERQLFLLESVRVLIVDEVDFIFNSSKQVSSLRKLLTSYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVIHIHVSPVEPMPSRLCHRFIICNNKRKLQTLLSLIQSDAPDSGIIFVGEQSEKSKRAGNAPSTYLVIDFLKTSYEGPLEIVLLEDDMNFNSRAVSLLELRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTSIIVPEERFVLHKYENELMFDSEELIP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60470g00007 462 Pfam DEAD/DEAH box helicase 87 260 IPR011545 GO:0003676|GO:0005524
Stsc60470g00007 462 SMART ultradead3 82 292 IPR014001 -
Stsc60470g00007 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 428 IPR027417 -
Stsc60470g00007 462 Gene3D - 290 461 IPR027417 -
Stsc60470g00007 462 Pfam Helicase conserved C-terminal domain 305 424 IPR001650 -
Stsc60470g00007 462 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 305 462 IPR001650 -
Stsc60470g00007 462 Gene3D - 60 277 IPR027417 -
Stsc60470g00007 462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 276 IPR014001 -
Stsc60470g00007 462 CDD DEADc 74 269 - -
Stsc60470g00007 462 CDD SF2_C_DEAD 295 424 - -
Stsc60470g00007 462 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 70 454 - -
Stsc60470g00007 462 SMART helicmild6 342 426 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60470g00007 Stsc-Chr60470 15546 18281 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60470g00007 73 445 Eukaryotic Initiation Factors Gene Family AT3G13920 27.034 4.14e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60470g00007 - - ahf:112763379 839.336