Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60470g00006 ATGCAAGTTACTAAAGTTGCAAGGATGTTGGCAGCGAAGCCAACTGGAGTCGAGGGGGATCAGAAGTCATGTACCATCATGGCTCTCTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACAACTTTTCTTGCTTGAATCTGTGCGGGTGCTGATTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTTAGTTCTCTTAGAAAGCTTTTGACTTCGTATTCATCATGCAATAACCGTCAGACAGTTTTTGCGAGTGCATCTATACCACAGCACAGACGATTTCTTCACGATTGTGTGCAGCAAAAATGGACAAAGAGTGATGTGATCCATATACATGTCAGCCCAGTGGAGCCTATGCCTTCTCGCCTGTGTCATAGATTTATTATATGCAATAACAAAAGGAAACTACAAACCCTGTTATCCTTGATTCAATCTGATGCACCCGATTCTGGCATTATATTTGTTGGTGAACAGTCTGAGAAGTCCAAAAGGGCTGGAAATGCTCCATCGACATACCTTGTCATTGACTTTTTGAAGACATCATATGAAGGGCCTTTAGAGATTGTCCTTCTCGAGGATGACATGAATTTCAACTCGCGCGCAGTTTCATTGTTGGAGCTTCGAAAAGGAGGTGGATATCTGCTTGTAGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCTGAAATGTCTCATATCTACAACTTTGACTTGCCAAGGACTGCAATTGATTATCTTCATCGAGCAGGCAGGACTTGTAGAAAACCTTTTTCTGACATGAAATGTACTGTTACCAGCATTATAGTTCCCGAGGAGAGGTTTGTTCTGCATAAATATGAAAATGAGTTGATGTTTGACTCTGAGGAGCTTATTCCATAA 957 0.4169 MQVTKVARMLAAKPTGVEGDQKSCTIMALLDGGTLRRHKSWLKAEPPTIVVATVGSLCQMLERQLFLLESVRVLIVDEVDFIFNSSKQVSSLRKLLTSYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVIHIHVSPVEPMPSRLCHRFIICNNKRKLQTLLSLIQSDAPDSGIIFVGEQSEKSKRAGNAPSTYLVIDFLKTSYEGPLEIVLLEDDMNFNSRAVSLLELRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTSIIVPEERFVLHKYENELMFDSEELIP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60470g00006 318 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 132 IPR014001 -
Stsc60470g00006 318 Pfam DEAD/DEAH box helicase 25 116 IPR011545 GO:0003676|GO:0005524
Stsc60470g00006 318 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 161 318 IPR001650 -
Stsc60470g00006 318 Gene3D - 146 317 IPR027417 -
Stsc60470g00006 318 Gene3D - 1 134 IPR027417 -
Stsc60470g00006 318 SMART helicmild6 198 282 IPR001650 -
Stsc60470g00006 318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 304 IPR027417 -
Stsc60470g00006 318 Pfam Helicase conserved C-terminal domain 161 280 IPR001650 -
Stsc60470g00006 318 CDD SF2_C_DEAD 151 280 - -
Stsc60470g00006 318 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60470g00006 Stsc-Chr60470 15546 18281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60470g00006 2 301 Eukaryotic Initiation Factors Gene Family AT3G13920 24.671 1.14e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60470g00006 - - ahf:112763379 610.527