Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60470g00004 ATGGGGAATAAAGAATTATGTGGTGCTCCACGTTTCCATTTCCCGGAATGTAAATTTGAGAAATCTCAAAAAAGGAATGCACATATTGTGTTGAAATATATCTTACCTGCTGCAATAATTCCCACCCTTGTAGTGGCATTCCTGTGCATCCTAAAATTCCGAAAGCGCAAGGTTATCAACAATTCAGATGTGGATCAATCAGGAGCAAGATGGAGAAGAATATCATACTATGACATTCAGCAAGCAACAGATAGGTTCAATGATGGCAACTTGCTAGTAAAAGTGTTTATTCTGGAACAAGAAGGATCATTTAGGAGTTTCAATGCTGAATGTGAGATATTGCGCAAAGTCCACCATCGAAACTTAACCAAAATCATTAGCAGCTGCAGCAAAATGGACTTCAAGGCATTGATCCTAAGCTACATGCTTAATGGGAGTTTAGAGAAGTGGCTACATTCAGAACACCATGGGTTGAGTATGATCCAGAGGCTAAACATAATGATAGATGTTGCAGAAGCAATGGATTATCTGCATAATGGTGGTTCTGTACCAATTATACATTGTGATTTGAAACCCAGCAACATATTACTAGATGAAGACATGGTTGCACATGTGACTGATTTTGGCATTGCAAAACTGCTGAGTGGAGATGACTCCATCACTCAAACCATGAATCTAGCCACAATAGGCTATATGGCCTCAGAGTATGGACTTGAGGGAACAGTGTCTAGGCAAGGTGATGTGTACAGTTATGGAATTTTACTTATGGAAACTTTCACACAGAAAAAACCCACTGATGAAATGTTTGTGGGAGAGTTTAGCATCAAACGGTGGGTGAAAATATCATGCCCTGATTCACTACATGATATCATTGATGCAAAATTATTAGTGGCAGAAGGAGAACCAGATACTAAACAAGATTGCTTGTTGTCTATAATGACTCCAGCTCTGAATTGCTCAGCTGAGTCACCTGGAGAAAGGACAAATATGAATGGCGTTGTCGTTGCCCTGAAGAAGATTAAAAGATTACTCTTGAACTAA 1041 0.3929 MGNKELCGAPRFHFPECKFEKSQKRNAHIVLKYILPAAIIPTLVVAFLCILKFRKRKVINNSDVDQSGARWRRISYYDIQQATDRFNDGNLLVKVFILEQEGSFRSFNAECEILRKVHHRNLTKIISSCSKMDFKALILSYMLNGSLEKWLHSEHHGLSMIQRLNIMIDVAEAMDYLHNGGSVPIIHCDLKPSNILLDEDMVAHVTDFGIAKLLSGDDSITQTMNLATIGYMASEYGLEGTVSRQGDVYSYGILLMETFTQKKPTDEMFVGEFSIKRWVKISCPDSLHDIIDAKLLVAEGEPDTKQDCLLSIMTPALNCSAESPGERTNMNGVVVALKKIKRLLLN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60470g00004 346 PANTHER OS04G0122200 PROTEIN 1 342 - -
Stsc60470g00004 346 ProSiteProfiles Protein kinase domain profile. 59 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60470g00004 346 SUPERFAMILY Protein kinase-like (PK-like) 64 337 IPR011009 -
Stsc60470g00004 346 Gene3D Transferase(Phosphotransferase) domain 1 143 344 - -
Stsc60470g00004 346 Gene3D Phosphorylase Kinase; domain 1 83 142 - -
Stsc60470g00004 346 Pfam Protein tyrosine and serine/threonine kinase 90 333 IPR001245 GO:0004672|GO:0006468
Stsc60470g00004 346 SMART serkin_6 77 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60470g00004 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Stsc60470g00004 346 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 142 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60470g00004 Stsc-Chr60470 9667 10883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60470g00004 1 341 Receptor kinase-like Gene Family AT3G47570 36.548 5.87e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc60470g00004 PK_Tyr_Ser-Thr 2.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60470g00004 - K13420 adu:107467292 595.119