Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60470g00002 ATGATATTATCCTTCAAGTACACAGCATCATCACCTCTCACCAGCTCTGCTGCATTCTCCTGCAGAAAGCATCTTCTACCACCCTCTATTCAGAATGTTCAACAAAGCACTGCACTACCCTCTCTCTCTTCCCAAAAACCAATTTACATTATTCCATGCACTCAGAACATCACATTGTCAACTAAGCCTAGAAGGAAGGTTATAGAGTGTCATGCCTATGAGGCAGATAAGTCACAGACACAAGCAGCTGGGACATCAGAGGCAGCACAGAAGCTCAAGATTGGTTTGTATTTTGCTACATGGTGGGCACTGAACGTTGTCTTCAACATATACAACAAGAAGGTTCTGAATGCTTTTCCTTACCCCTGGCTCACTTCCACTCTGTCCCTCGCCGCCGGCTCTCTCATCATGTTCATCTCCTGGGCCACAAGGCTCGCTCATCCCCCTAAAGTTAACATGGATTTCTGGAAGGCCTTGTTCCCTGTTGCGGTAGCACACACCATTGGGCATGTTGCAGCTACTGTGAGCATGTCCAAAGTTGCAGTGTCTTTCACTCACATCATCAAGAGTGGAGAGCCGGCTTTCAGCGTCCTAGTATCGAGGTTCTTGCTTGGCGAATCGTTCCCTATACCGGTTTACTTGTCACTAGTGCCAATTATTGGAGGTTGTGCTCTTGCTGCTGTGACTGAGCTCAATTTTAACATGATCGGGTTTATGGGGGCTATGATATCAAATTTGGCTTTTGTGTTTAGGAACATATTCTCCAAGAAGGGAATGAAGGGCATGTCTGTTAGTGGAATGAACTATTATGCTTGCCTTTCCATATTGTCTCTATTGATTCTGACACCTTTTGCCATTGTTGTGGAGGGTCCTAAGATGTGGGCTGTTGGATGGCAAACTGCACTATCTCAGATTGGTCCCAATTTTGTTTGGTGGGTGGTTGCGCAGAGTGTGTTCTACCACTTGTATAATCAAGTCTCTTACATGTCTCTTGATCAAATATCTCCCTTGACATTTAGCATAGGGAACACAATGAAGAGAATTTCAGTAATTGTCTCTTCCATTCTTATCTTCCACACGCCAATTCATCCCTCCAATGCCCTTGGTGCTGCCATTGCTATTCTTGGCACCTTCTTCTATTCACAGGCAAAACAGTGA 1158 0.4499 MILSFKYTASSPLTSSAAFSCRKHLLPPSIQNVQQSTALPSLSSQKPIYIIPCTQNITLSTKPRRKVIECHAYEADKSQTQAAGTSEAAQKLKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLIMFISWATRLAHPPKVNMDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGESFPIPVYLSLVPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMSVSGMNYYACLSILSLLILTPFAIVVEGPKMWAVGWQTALSQIGPNFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSILIFHTPIHPSNALGAAIAILGTFFYSQAKQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60470g00002 385 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 92 384 IPR004696 GO:0016020|GO:0022857|GO:0055085
Stsc60470g00002 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 284 381 - -
Stsc60470g00002 385 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Stsc60470g00002 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 134 228 - -
Stsc60470g00002 385 PANTHER SOLUTE CARRIER FAMILY 35 93 384 - -
Stsc60470g00002 385 Pfam Triose-phosphate Transporter family 92 381 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60470g00002 Stsc-Chr60470 4883 6748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60470g00002 36 384 Antiporters AT5G54800 76.944 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60470g00002 K15283 - gmx:100804205 595.119