Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60469g00001 ATGAAGACATCATCTTTCACTGACCTTCTTTCAAACAACAACAGTAACATAATCATGAACATGGATGATTTCGGTGATGTTAATGTTAATCGAAACCAAGATTCTGTTCCAAAATTCAAGTCTGTTACACCTCCTTCACTACCTCTTTCTACCTCACAAACTACTTCTTCTTACTTCCCTTTTACATCCTCACCTTTTAGCCCTACTGAGTTCTTGAACTCATCTTTATTCCTTTCTTCTCCTAATATTTTTGCATCTCCTACTATTGAGGCTTTTGCTGGCCATGGCTTCAACAACAAGGAGGATAAGAAGAACTTCTCTGAATTCTCTTTCCAAACACAAACTAAGACATCTTCTTCCATTCCAGAAGAACCACTTAACATATGGAAATTCACAGAACCTATAAACCAAAGTGAATTTTCATCTCAGAAGGAAGCAACAAAATCTGAATATCCATCAACACAGAGCTTCTCCTCAGAAATGTTAGCAACAAAACCCGGATTACAAAGCAATTCAGTGCCTGAGTCCGGTTCTTTCAACTATGCTAACGCGTCTCAGCCCATTAGAGAACAAAGGAGATCGGAAGATGGTTACAATTGGAGGAAATATGGACAGAAACAAGTGAAAGGGAGCGAGAATCCGCGGAGTTATTACAAGTGCACACATCCGAATTGTGCAATGAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACAAATAACTGAGATAGTTTATAAGGGAAGTCATAATCATCCTAAGCCACAGAATTCTAGAAGAAGTTCAACCTCTCAGCAAACTATTCATCAGCAGCCTTCTTCATCCTGCACTAACTCGGGGATCTCGGATCAGTCAGTGGTGACATTAGGCCATCCTCAACTTGATCGTGTGTCGATGCAAGAAGATTCCTCGGCTTCCATGGGAGAGGAAGAATTTGAGCAAACTTCTCAAACCAGTTACTCTGGTGGAGATGAAGATGAACATGGACCAGATGCTAAAAGATGGAAGGGGGAGAACGAACACGATGGTCATTCGGCCTATGGAAGCAGAGCTGTTAGGGAACCTAGAGTTGTTGTCCAAACAACAAGCGAAATCGATATTCTTGATGATGGCTACAGATGGAGGAAATATGGACAGAAAGTAGTTAAGGGAAATCCAAATGCAAGGAGTTATTACAAGTGCACAGCCCCTGGTTGTTCGGTGAGGAAACATGTCGAGCGAGCCGCAAATGATATAAAATCAGTGATCACAACTTATGAAGGGAAACACAACCATGATGTGCCTGCAGCGCGCGGCAGCGCCAGTTACAACATGAACAAAAATTCTCTAAACAGAAACAATAGCAATGCACCAGCGCCAATAAGGCCTGCGGCAGTGAATGGTTATTCTAGCACGCCAAATTTCACGAATTCACTTTACAATCCTAGCCTTCCGGCAACCGGAAGTCAAGAATCATCTTCCCTAGACATGCTGCAAGGCTCTGGATTTTTTGGCTACTCGTCTCTTGGAAGATCAATGGGTTCATATGACAACAATTCGCAATTTTCAGATGGTGCATACATTAAGGCCAAGGATGAAAGGAAGGATGACTCATTCCTTGAGTCATTTCTTTCAAAGAACTAA 1617 0.4193 MKTSSFTDLLSNNNSNIIMNMDDFGDVNVNRNQDSVPKFKSVTPPSLPLSTSQTTSSYFPFTSSPFSPTEFLNSSLFLSSPNIFASPTIEAFAGHGFNNKEDKKNFSEFSFQTQTKTSSSIPEEPLNIWKFTEPINQSEFSSQKEATKSEYPSTQSFSSEMLATKPGLQSNSVPESGSFNYANASQPIREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHPNCAMKKKVERSLEGQITEIVYKGSHNHPKPQNSRRSSTSQQTIHQQPSSSCTNSGISDQSVVTLGHPQLDRVSMQEDSSASMGEEEFEQTSQTSYSGGDEDEHGPDAKRWKGENEHDGHSAYGSRAVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAANDIKSVITTYEGKHNHDVPAARGSASYNMNKNSLNRNNSNAPAPIRPAAVNGYSSTPNFTNSLYNPSLPATGSQESSSLDMLQGSGFFGYSSLGRSMGSYDNNSQFSDGAYIKAKDERKDDSFLESFLSKN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60469g00001 538 ProSiteProfiles WRKY domain profile. 189 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60469g00001 538 SUPERFAMILY WRKY DNA-binding domain 358 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60469g00001 538 MobiDBLite consensus disorder prediction 139 188 - -
Stsc60469g00001 538 SUPERFAMILY WRKY DNA-binding domain 190 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60469g00001 538 MobiDBLite consensus disorder prediction 421 456 - -
Stsc60469g00001 538 MobiDBLite consensus disorder prediction 295 349 - -
Stsc60469g00001 538 ProSiteProfiles WRKY domain profile. 361 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60469g00001 538 MobiDBLite consensus disorder prediction 249 282 - -
Stsc60469g00001 538 MobiDBLite consensus disorder prediction 322 347 - -
Stsc60469g00001 538 MobiDBLite consensus disorder prediction 244 282 - -
Stsc60469g00001 538 MobiDBLite consensus disorder prediction 432 451 - -
Stsc60469g00001 538 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 89 446 IPR044810 GO:0003700
Stsc60469g00001 538 Pfam WRKY DNA -binding domain 367 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60469g00001 538 Pfam WRKY DNA -binding domain 195 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60469g00001 538 FunFam WRKY transcription factor 33 353 419 - -
Stsc60469g00001 538 MobiDBLite consensus disorder prediction 139 216 - -
Stsc60469g00001 538 MobiDBLite consensus disorder prediction 295 321 - -
Stsc60469g00001 538 FunFam WRKY transcription factor 183 254 - -
Stsc60469g00001 538 Gene3D WRKY domain 351 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60469g00001 538 Gene3D WRKY domain 181 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60469g00001 538 SMART WRKY_cls 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60469g00001 538 SMART WRKY_cls 366 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60469g00001 Stsc-Chr60469 7371 10297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60469g00001 63 535 WRKY Transcription Factor Family AT2G38470 47.400 1.22e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc60469g00001 WRKY 9.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60469g00001 K13424 - gmx:100792833 667.537