Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60468g00012 ATGATGGAAAATAATAAGATTGAAGATGAGATGATGCCAGGTTTCAGATTTCACCCAACAGATGAAGAGATTGTTGATTTTTATCTGAAGAGAAAAATTCAGCAGAAATCTCTTCCCATTGAATTGATCAAGCAAGTTGATATCTACAAGTATGAGCCATGGGACCTTCCAAGGTTGGCAAGTAATGGAGAAAAAGAGTGGTATTTCTACTGCCCAAGAGACAGAAAATACAGGAACAGTGCAAGACCAAACAGAGTTACAAGATGTGGATTTTGGAAGGCCACTGGAACTGACAGACCAATTTACTCTTCTGAGGGTAAATCATCCATTATTATTGGTTTGAAGAAATCACTTGTTTTCTACAGAGGAAGAGCTGCTAAGGGTTTCAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCTTCTCTTTCTTCTTCTTCTTCTGATTCATCCAACAAACTCTCTCACAAAACCATCCCTGTTTCTGATTCATGGGCAATATGTAGGATATTCAAGAAAACAAACACAATGTCAATGGCACACAAAGCCTCATTATCTCATCATCATCATCCTTATTACAATTGGAATCATCATAATCAATTATTTGATGACTTAATCCCCCCACATCAACAACAACAACATTCTATTCCAATCTCCAACACCAATTTCATCTTCTACAATGACACTTCCAATACTACCCTTGATGAAGCCACAAAAGAAATTGATCATGCTACTACTACTAATACTAATAGTAGCTCAATTATTTCTTCCAACATTGCCCTTCATGAAGATCAAAATCATCATCAACATTTCAATAACAATAGTAGTAGTGGCTTCTCATCTTCTTCAATTAGCATGCCCCATGATATTATGATGATGCAACCAAACATCATGGTAGCTACTACCTCAGATGATGATGATTCAGGTATAATCACAACAACAACAACAATTGGGTTCCCATTCAATTTGCCTCCAAATGATAATACTACTGTGCCATGGGACTACTCTTCAGAAATCTCCACTACCTATTCCACCAATAAATGTTACACTTAA 1053 0.3666 MMENNKIEDEMMPGFRFHPTDEEIVDFYLKRKIQQKSLPIELIKQVDIYKYEPWDLPRLASNGEKEWYFYCPRDRKYRNSARPNRVTRCGFWKATGTDRPIYSSEGKSSIIIGLKKSLVFYRGRAAKGFKTDWMMHEFRLPSLSSSSSDSSNKLSHKTIPVSDSWAICRIFKKTNTMSMAHKASLSHHHHPYYNWNHHNQLFDDLIPPHQQQQHSIPISNTNFIFYNDTSNTTLDEATKEIDHATTTNTNSSSIISSNIALHEDQNHHQHFNNNSSSGFSSSSISMPHDIMMMQPNIMVATTSDDDDSGIITTTTTIGFPFNLPPNDNTTVPWDYSSEISTTYSTNKCYT 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60468g00012 350 Gene3D NAC domain 20 178 IPR036093 GO:0003677|GO:0006355
Stsc60468g00012 350 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
Stsc60468g00012 350 FunFam NAC domain-containing protein 35 20 176 - -
Stsc60468g00012 350 ProSiteProfiles NAC domain profile. 11 173 IPR003441 GO:0003677|GO:0006355
Stsc60468g00012 350 SUPERFAMILY NAC domain 8 173 IPR036093 GO:0003677|GO:0006355
Stsc60468g00012 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60468g00012 Stsc-Chr60468 156465 158827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60468g00012 3 178 NAC Transcription Factor Family AT5G39820 70.000 2.36e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc60468g00012 NAM 7.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60468g00012 - - aip:107621433 407.912