Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60468g00008 ATGGAGATAATCAGCAGCACCACCACTACTACCATAACGAACCCACCAAAATCACCAGAACCCGATTCAGAAACTCCGACCCGGATCCAACCCGCAAACACTAAGCCTGTTTCATTCTCCAACGGAGTACTCAAGCGCCACCACCCTCCTCCACACTTCCACCACCAGCTCGCAAGCCCTACCGCCGTCTCCGCCGCCGTGGCTGTTACATATAAGGAATGCTTGAAGAATCACGCCGCCAGCCTCGGCGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGCCGGCGCCAACCGCCACCGCCGGCGATCCAACTTCCATCAAGTGCGCCGCATGCGGCTGCCATCGTAACTTCCACCGCCGCGATCCCGACGAGCCGCCACCACCGCCTCCACTCTCTCCTGTAATCGAGTACCAATCTCACCACCGTCATCACCCTCTGCCGCCGCCTCCGCCACCTCCGTTCCACCATCACCACCACCACCGGAGCCCTAACTCCGCGTCGCCACCTCCGATCTCGTCTTCCTACTATCCCTCCGCACCTCACATGCTCCTCGCTCTGTCCTCCGGCGGCGGCCTCTCGGTTCCGCCGGAAAACACCGCCTTACCAGCCTCCAACCACCACCACCATAACCACCACAGCTCCCGAAAACGGTTCAGAACGAAGTTCACGCAAGAACAGAAGGAGAAGATGCACGTGTTCGCTGAACGCGTGGGTTGGAAGATTCAGAAGCGAGACGAAGATCTTATCCAAGAATTTTGCCATGAAATCGGTGTTGATCGTGGCGTTCTCAAAGTTTGGATGCACAATAACAAGAACACGTTCGGGAAGAGAGAAAGAGAACAAGGTAACGGTAACGGTAACGGCAATAAGAATGTTCTAGAAGGTACTGGAATCAACGGTGGCGATGATGATGAGAATAATAACAACAACAACAAGAGCAATGGTTTGAACGGTGGGATGATGACGATGAATATGATGAACGGTGGAGATGGTAGCGCTCATGATGATGATGCTAACGGTGCCGGTACCAATGGCTCTTCTTCTTCTTCTTGA 1056 0.5521 MEIISSTTTTTITNPPKSPEPDSETPTRIQPANTKPVSFSNGVLKRHHPPPHFHHQLASPTAVSAAVAVTYKECLKNHAASLGGHALDGCGEFMPAPTATAGDPTSIKCAACGCHRNFHRRDPDEPPPPPPLSPVIEYQSHHRHHPLPPPPPPPFHHHHHHRSPNSASPPPISSSYYPSAPHMLLALSSGGGLSVPPENTALPASNHHHHNHHSSRKRFRTKFTQEQKEKMHVFAERVGWKIQKRDEDLIQEFCHEIGVDRGVLKVWMHNNKNTFGKREREQGNGNGNGNKNVLEGTGINGGDDDENNNNNNKSNGLNGGMMTMNMMNGGDGSAHDDDANGAGTNGSSSSS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60468g00008 351 MobiDBLite consensus disorder prediction 280 295 - -
Stsc60468g00008 351 MobiDBLite consensus disorder prediction 275 351 - -
Stsc60468g00008 351 FunFam Zinc-finger homeodomain protein 2 203 277 - -
Stsc60468g00008 351 NCBIfam homeobox domain, ZF-HD class 216 273 IPR006455 -
Stsc60468g00008 351 Gene3D - 203 276 - -
Stsc60468g00008 351 MobiDBLite consensus disorder prediction 302 322 - -
Stsc60468g00008 351 MobiDBLite consensus disorder prediction 121 175 - -
Stsc60468g00008 351 SUPERFAMILY Homeodomain-like 205 277 IPR009057 -
Stsc60468g00008 351 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
Stsc60468g00008 351 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Stsc60468g00008 351 MobiDBLite consensus disorder prediction 188 219 - -
Stsc60468g00008 351 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 274 - -
Stsc60468g00008 351 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 70 122 IPR006456 -
Stsc60468g00008 351 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60468g00008 Stsc-Chr60468 86656 87867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60468g00008 16 292 ZF-HD Transcription Factor Family AT3G28920 54.671 1.92e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc60468g00008 ZF-HD_dimer 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60468g00008 - - jre:108985975 309.301