Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60467g00021 ATGGTTTCAAGGTCATATTCTAACTTGTTAGAGCTTACTTCGTGTGACTCGCCGACTTTCGGCCGCGAAAAGAAAAGGCTTCCTCGAGTGGCAACTGTTGCCGGAGTGCTGTCTGAGCTAGACGACGAGGCAAGCAACAGTGCGGGTTCGGACGCTCCCTCCTCGATCTCTCAAGATAGGATGATCATAGTAGGTAACCAGCTTCCCTTAAAGGCACACAGAAAAGACAATGGTACTTGGGACTTCACATGGGACGAGGACTCGCTTCTTTTGCAGCTCAAAGATGGTCTTGGTGAAGATGTAGAAACTATTTATATTGGTTGTCTAAAGGAAGAAATCGAGCCGAGTGAGCAAGAAGATGTTGCTCAGTACTTGCTTGACACATTCAAATGTGTTCCCACTTTCCTCCCACCAGAGCTTTTTACCAAATTCTATCATGGATTCTGCAAACAGCATCTGTGGCCTTTGTTTCACTACATGCTTCCGCTCTCGCCTGATCTCGGTGGTCGATTTGATAGGTCCCTTTGGCAAGCTTATGTTTCTGTGAACAAGATATTTGCTGATAAAGTAATGGAAGTGATTAGCCCTGATGACGATTTTGTATGGGTTCATGATTACCATCTCATGGTTCTTCCAACATTTCTGAGAAAGAGGTTCAACAGGGCAAGGCTAGGATTCTTCCTTCACAGTCCATTCCCTTCCTCAGAGATATACCGAACCCTCCCTGTTAGGGATGAGCTTCTTAGAGCTCTTTTGAATTCTGACCTTATTGGATTTCATACTTTTGATTATGCGAGGCATTTCCTTTCTTGCTGCAGTAGAATGCTTGGTCTTTCCTATCAATCCAAGCGAGGCTACATTGGTCTCGAGTACTATGGAAGAACAGTAAGCATTAAGATTCTTCCTGTTGGGATTCACATAGGACAGCTTCAGTCAGTCATGAATCTTCCTGAGACAGAAAACAAGGTTGCAGAGTTACAAAACAAGTTCAGAGGTCAAACTGTGATGCTCGGGGTTGACGACATGGATATCTTTAAAGGAATCAGCTTAAAACTCTTGGCCATGGAACAGTTGCTTTTACAACATCCTGACAAGAGGGGCAGAGTTGTTTTAGTCCAAATCGCAAACCCCGCCNNNNNNNNNNGAGGCCGTGGGAAGGATGTACAGGAGGTCCAGAGTGAAACTTATGCCACAGTGAAAAGAATCAATAATACATTTGGAAGGCCTGGATACACACCTGTAATATTGATCGATACGCCGCTTCAGTTTTATGAGCGGATAGCTTATTATGTGATTGCTGAATGTTGCCTTGTTACAGCAGTGAGAGATGGTATGAACCTAATACCATATGAGTATATCATTTGTAGACAAGGAAGTGAGAAGATAGATAAGATTCTAGGGACAGGCTCATTTAGCCAAAAGAAGAGCATGCTGGTGGTGTCTGAGTTCATTGGGTGCTCCCCATCATTAAGTGGGGCAATTAGAGTGAATCCATGGAATATTGATGCTGTTGCTGAAGCAATGGATTCGGCACTCATAGTTCCAGAGTCCGAAAAACAGATGCGCCACGAGAAGCATTATAGGTATGTCAGTACTCATGATGTTGCATATTGGGCGCGTAGCTTCTTGCAGGATCTGGAAAGGGCATGTAGGGATCATCTGAGGAGGAGATGCTGGGGAATTGGCTTTGGTTTAGGATTTCGGGTTATTGCTTTGGATCCAAACTTTAGAAAGCTGTCTGTGGAACATATTGTATCGGCTTATAAGAGGACTAAACACCGGGCCATTCTTTTGGATTATGATGGTACCATGATGCAGCCAGGTTCAATTAGTACAACACCTAGTGCTGAAGCTGTTGCCATCTTGAACAGCTTGTGCAAGGACCCCAACAATTGTGTTTTCATTGTAAGTGGAAAGGAAAGAAAAACTCTTACCGACTGGTTTTCCTCTTGTCAAAGGCTTGGAGTTGCAGCCGAGCATGGTTATTTTGTGAGGACAAATCATAATGCAGACTGGGAAGAATGTGTTTCTGTGCCAGATTTCGATTGGAAGCAGATTGCCGAGCCAGTAATGCAGTTGTACACGGAAACAACTGATGGTTCTAACATAGAGGCCAAAGAAACTGCTCTTGTTTGGAATTATGAGTTTGCAGACCGAGATTTCGGTTCATGTCAGGCCAAGGAGCTTCTGGATCATCTGGAAAGTGTTCTTGCCAATGAGCCTGTTTCTGTTAAAAGTAGTCCTCACATCGTGGAAGTCAAACCTCAGGGGGTGAGCAAGGGTATTGTCGCAGAGCGTCTTCTCTTTACAATGCAACAAATGGGAGTTATTCCAGATTTTGTTCTATGCATTGGAGACGACAGATCAGACGAGGACATGTTTGGTGTAATAATGAGTGCAAGGGAATCTCTGTCTCCAGTTGCAGAGGTGTTTCCTTGCACCGTGGGTCAGAAGCCGAGCAAGGCCAAGTATTACTTGGAAGACACAAGCGAGATTCTGAGAATGTTGCAGGGGCTTGCCAATGCTTCAGACCAATCTGTTACAAGTTCTCCACAGCCTCTTCATTTAGTATTGTGA 2577 0.4424 MVSRSYSNLLELTSCDSPTFGREKKRLPRVATVAGVLSELDDEASNSAGSDAPSSISQDRMIIVGNQLPLKAHRKDNGTWDFTWDEDSLLLQLKDGLGEDVETIYIGCLKEEIEPSEQEDVAQYLLDTFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQSVMNLPETENKVAELQNKFRGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHPDKRGRVVLVQIANPAXXXXGRGKDVQEVQSETYATVKRINNTFGRPGYTPVILIDTPLQFYERIAYYVIAECCLVTAVRDGMNLIPYEYIICRQGSEKIDKILGTGSFSQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALIVPESEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDGTMMQPGSISTTPSAEAVAILNSLCKDPNNCVFIVSGKERKTLTDWFSSCQRLGVAAEHGYFVRTNHNADWEECVSVPDFDWKQIAEPVMQLYTETTDGSNIEAKETALVWNYEFADRDFGSCQAKELLDHLESVLANEPVSVKSSPHIVEVKPQGVSKGIVAERLLFTMQQMGVIPDFVLCIGDDRSDEDMFGVIMSARESLSPVAEVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASDQSVTSSPQPLHLVL 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60467g00021 858 FunFam Alpha,alpha-trehalose-phosphate synthase 313 531 - -
Stsc60467g00021 858 Gene3D - 719 852 IPR023214 -
Stsc60467g00021 858 Gene3D - 593 710 IPR023214 -
Stsc60467g00021 858 Gene3D Glycogen Phosphorylase B; 53 311 - -
Stsc60467g00021 858 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 311 - -
Stsc60467g00021 858 Pfam Glycosyltransferase family 20 60 547 IPR001830 GO:0003824|GO:0005992
Stsc60467g00021 858 NCBIfam HAD-IIB family hydrolase 596 797 IPR006379 -
Stsc60467g00021 858 CDD HAD_TPP 595 831 - -
Stsc60467g00021 858 NCBIfam trehalose-phosphatase 592 840 IPR003337 GO:0003824|GO:0005992
Stsc60467g00021 858 CDD GT20_TPS 60 547 IPR001830 GO:0003824|GO:0005992
Stsc60467g00021 858 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 34 841 IPR001830 GO:0003824|GO:0005992
Stsc60467g00021 858 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Stsc60467g00021 858 Pfam Trehalose-phosphatase 597 830 IPR003337 GO:0003824|GO:0005992
Stsc60467g00021 858 SUPERFAMILY HAD-like 594 840 IPR036412 -
Stsc60467g00021 858 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 852 - -
Stsc60467g00021 858 Gene3D Glycogen Phosphorylase B; 312 531 - -
Stsc60467g00021 858 FunFam Trehalose-6-phosphate synthase 2 677 756 - -
Stsc60467g00021 858 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60467g00021 Stsc-Chr60467 135145 139301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60467g00021 1 853 Trehalose Biosynthesis Gene Families AT4G17770 78.256 0.0 1423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60467g00021 K16055 - gmx:100782799 1580.84