Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60467g00019 ATGTCCACCTTCCTAATCCTTCTGATTTTCTTCCTTCTTTGCTGCAACTCTCTTGCACCTCTTGTTTATTCCCTCAATGCCGAAGGCTCTGTGCTCTTGACCCTTAAGCACTCCCTCCAAGACCCACAAGGCTCCATGGCCACTTGGAATTCTTCCCATGACAACCCTTGTTCATGGAACGGCATTACCTGCAAGGACCAAACTGTTGTCTCCATTAGCATCCCAAAACGCAAACTTTATGGCTCTCTCCCTTCCACTCTTGGATCTCTCTCCCAGCTCCGCCATCTCAACTTCAGGAACAACATGCTCTTTGGAGCCTTGCCCACTCAGCTCTTTCAAGCTCAGGGCCTCCAAAGTTTGGTCCTTTATGGCAATTCTTTCTCTGGGCCTCTTCCCACTGAGATTCACAATCTCAGGTACCTTCAAACTCTTGACTTGTCTCAAAATTTCTTCAATGGTTCGTTGCCTGCTACAATTGTCCAATGCAAGAGGCTCAGAACCCTTGTTCTCAGTAGAAACAATTTCACTGGCACTTTGCCTATTGGATTTGGTACTAGTTTCTCTTCCCTTGAGAAACTTGACCTCTCTTTCAATCAATTCAATGGTTCAATTCCTGCAGACTTGGGTAATCTAACTAGCCTTCAAGGAACTGTTGATTTGTCTCATAATCATTTGAGTGGTTCAATACCTGCTAGCCTTGGTAACTTGCCTGAGAAGGTTTACATTGATCTTACTTACAACAATTTGAATGGTCCAATTNNNNNNNNNNTTATTGGCAATCCTGGTCTATGTGGCCCTCCTTTGAAGAATCCATGTGCCCCTGACACTCCAGGTGCTAGTTCACCTTCCTCATTCCCATTCATGCCTCATAATGACTCACCTCAGGATAATGGCAATGGTTCTGGGAAGAGTGAGAAAAGCAAAGGGTTAACTAAGGGTGCTGTGGTTGGCATTGTTGTGGGTGATGTCATTGGAATTTGCCTTTTAGGTCTGCTGTTCTCTTATTGCTACTCCAGGGTTTGCGGTTTTGATCAGGATCAGGATGTTATTGGTGTTAGCAAGGGGAGGAAAGGAAGTAGTAAAGAGTGTTTCTGCTTCCGAAAGGACGAATCAGAGGCCCTGTCTGATCATGTTGAGCAATATGATCTTGTTGCATTAGATAGTCAAGTGGCCTTTGATTTGGATGAACTTCTTAAGGCGTCGGCTTTTGTTCTTGGCAAAAGTGGAATTGGAATTATGTACAAAGTGGTGCTTGAAGACGGCCTTGCGTTGGCGGTGAGAAGGTTGGGGGAGGGAGGTTCTCAAAGGTTCAAAGAGTTCCAAACCGAAGTAGAGGCAATAGGGAAGTTGAGACATCCAAACATTGTGACTCTCAGAGCTTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATATACCGAATGGAAGCCTTGCTGCTGCGATTCATGGGAAGCCTGGACTAGTTACATTTAGACCACTATCATGGTCTTATCGAATGAAAATCATGAAAGGAACTGCAAAAGGATTGGTCTACTTGCATGAGTTTAGTCCCAAAAAGTATGTCCATGGAGACCTGAAGCCTAGTAACATCCTTCTTGGACATAACATGGAACCACACATATCTGATTTTGGACTCGGGCGCCTCGCAAATATTGCCGGAGGCTCCCCAACCGTGCAATCCAGCCGAGTGGCCGCTGAGAAGCCGCAAGAGAGACAAAAAAGCTTGTCTGTAGAACTTACACCTAATATCTTGGGGAATGGTTATCAGGCTCCAGAAACACTGAAAGTGGTGAAGCCATCACAGAAGTGGGATGTTTATTCATATGGTGTGATCTTGTTGGAGATTATCAGCGGTCGGTTACCTATTGTGCAAGTTGGTAACTCGGAAATGGACCTCGTTCAATGGATTCAGTTCTGCATTGAAGAGAAGAAGCCACTCTCAGATGTGTTGGACCCATGTCTAGCTGAGGAGGCAGATAAGGAAGAGGAGATAATTGCAGTGTTGAAGATTGCAATGGCTTGTATCCAAAGCAGCCCTGAAAAGAGACCTACAATGAGGCATGTCCTTGATGCTTTGGATAGATTATGTGTATCCTCTGACTGA 2112 0.4465 MSTFLILLIFFLLCCNSLAPLVYSLNAEGSVLLTLKHSLQDPQGSMATWNSSHDNPCSWNGITCKDQTVVSISIPKRKLYGSLPSTLGSLSQLRHLNFRNNMLFGALPTQLFQAQGLQSLVLYGNSFSGPLPTEIHNLRYLQTLDLSQNFFNGSLPATIVQCKRLRTLVLSRNNFTGTLPIGFGTSFSSLEKLDLSFNQFNGSIPADLGNLTSLQGTVDLSHNHLSGSIPASLGNLPEKVYIDLTYNNLNGPIXXXXIGNPGLCGPPLKNPCAPDTPGASSPSSFPFMPHNDSPQDNGNGSGKSEKSKGLTKGAVVGIVVGDVIGICLLGLLFSYCYSRVCGFDQDQDVIGVSKGRKGSSKECFCFRKDESEALSDHVEQYDLVALDSQVAFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVTLRAYYWSVDEKLLIYDYIPNGSLAAAIHGKPGLVTFRPLSWSYRMKIMKGTAKGLVYLHEFSPKKYVHGDLKPSNILLGHNMEPHISDFGLGRLANIAGGSPTVQSSRVAAEKPQERQKSLSVELTPNILGNGYQAPETLKVVKPSQKWDVYSYGVILLEIISGRLPIVQVGNSEMDLVQWIQFCIEEKKPLSDVLDPCLAEEADKEEEIIAVLKIAMACIQSSPEKRPTMRHVLDALDRLCVSSD 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60467g00019 703 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 185 - -
Stsc60467g00019 703 SMART LRR_typ_2 90 114 IPR003591 -
Stsc60467g00019 703 SMART LRR_typ_2 187 211 IPR003591 -
Stsc60467g00019 703 SMART LRR_typ_2 138 162 IPR003591 -
Stsc60467g00019 703 MobiDBLite consensus disorder prediction 276 306 - -
Stsc60467g00019 703 SUPERFAMILY L domain-like 27 268 - -
Stsc60467g00019 703 SUPERFAMILY Protein kinase-like (PK-like) 404 695 IPR011009 -
Stsc60467g00019 703 Gene3D Ribonuclease Inhibitor 183 273 IPR032675 -
Stsc60467g00019 703 SMART serkin_6 404 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60467g00019 703 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Stsc60467g00019 703 CDD STKc_IRAK 405 698 - -
Stsc60467g00019 703 FunFam Leucine-rich repeat receptor-like protein kinase 382 474 - -
Stsc60467g00019 703 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Stsc60467g00019 703 Gene3D Phosphorylase Kinase; domain 1 367 474 - -
Stsc60467g00019 703 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515
Stsc60467g00019 703 FunFam Leucine-rich repeat protein kinase family protein 475 701 - -
Stsc60467g00019 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Stsc60467g00019 703 Pfam Protein kinase domain 405 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60467g00019 703 ProSiteProfiles Protein kinase domain profile. 399 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60467g00019 703 MobiDBLite consensus disorder prediction 269 306 - -
Stsc60467g00019 703 Gene3D Transferase(Phosphotransferase) domain 1 475 702 - -
Stsc60467g00019 703 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 163 698 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60467g00019 Stsc-Chr60467 124375 127344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60467g00019 7 703 Receptor kinase-like Gene Family AT2G01210 66.248 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc60467g00019 Pkinase 5.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60467g00019 - - gmx:100792873 1130.16