Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60467g00018 ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCCACAACTTTTCACTCAGTTTTTTACCAAGATAAACAGAATGATGACATAATTGATCTTGGTCTTAGCCTCAAAACTGTTCAACATGAGGCTTCTCATTCTTCTGCCAACTTGTATGATGATGACATTATGGAGTGGCCTCACTCTAATCTCAACCTGAAGAATTCAAGCAAGAATTTTGATGAAGAGATAGAAGGGGTCCAAAGCAATGAGAGATGGGCATATGTGAAGGTGAATATGGATAGGGTTACCATTGGTAGGAAAATTTGCATACTTGATCATGGAGGATACTCAAGTCTAGCAATCCAATTAGAAGACATGTTTGGAAGCCAAAGCCTCTCTGGTCTAAGATTGTTCCAACCTGATTCAGAGTACTCATTGTTCTACAAAGACAGAGAAGATAATTGGAGGAATGTAGGTGATGTCTCATGGAAAGAGTTTGTAGAATGTGTGAAGCGGTTAAGGATTGTGAAAAAGAATGCAGGCCTTGCTTCCTGTTCAGCTGGATACATCTAA 549 0.3898 MDSNTSSFLLNSTTFHSVFYQDKQNDDIIDLGLSLKTVQHEASHSSANLYDDDIMEWPHSNLNLKNSSKNFDEEIEGVQSNERWAYVKVNMDRVTIGRKICILDHGGYSSLAIQLEDMFGSQSLSGLRLFQPDSEYSLFYKDREDNWRNVGDVSWKEFVECVKRLRIVKKNAGLASCSAGYI 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60467g00018 182 SUPERFAMILY CAD & PB1 domains 84 168 - -
Stsc60467g00018 182 Pfam AUX/IAA family 61 171 IPR033389 -
Stsc60467g00018 182 Gene3D - 78 179 - -
Stsc60467g00018 182 ProSiteProfiles PB1 domain profile. 84 170 IPR000270 GO:0005515
Stsc60467g00018 182 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 30 171 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60467g00018 Stsc-Chr60467 121975 122927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60467g00018 79 168 B3 DNA Binding Superfamily AT1G19220 35.165 1.68e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc60467g00018 AUX_IAA 4.9e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60467g00018 K14484 - gmx:100777024 295.819