Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60467g00016 ATGGAGGCGCAACCTCCAACGCCGCCACACAGCGCACCGCCTCCGCCGTTGTCTTCGGTGGCGCCGCCGCAGCCACCTCAGCAACCAGCGCCGCCACCGCCGTCACACCTGAACTACCCTGACTCGGTGGACTCGTCCCCACGCTCTCGCAACACGGACTCGTGGGACGAGCCCTTCCCGCCGGCGTCGTCGAAGCTCCGTCTCATGTGCAGCTACGGCGGCCACATCGTTCCCCGCCCTCACGACAAGTCTCTCTGCTACGTCGGCGGCGACACGCGAATCGTGGTGGTTGAGCGAACAACTTCACTGGCGGACCTCTCGACGCGCCTGTCAAAGACGTTCCTGAACGGAAGACCGTTCAGCCTGAAGTACCAGCTCCCGAACGAGGACCTGGATTCTCTGATTTCAGTTACGACCGATGAGGACCTTGACAACATGATCGATGAGTATGACAGAACCAGCAACAACCCATCCCTGAAACCCTCGCGAATTCGGCTCTTTCTGTTCCCAACGAAGCCCGAATCGGTTCAGAGTATTCCGCCGATTCTAGAAAGTTCCGCCAAGTCTGAGGATTGGTNNNNNNNNNNGAACGCCCTAAACGGCGCCGGATTGCTGAACCGGGGTTTCTCTGACTCTGCCTCTGTGAATTGCCTTTTAGGTCTCGACGACGATGCTTCCGGGAATAATGTTGACCATAACTCAAGGGACCCTGTTGAGGCTTCTTCTCAGCCTGGATCTTTTGGGAACGGAAAGAATCCCAAGCAGGAGGTTCATTCTGTACCCGATTCGCCCATGCTCGAGACTACTTCTTCCTTTGGCTCTACTTCTTCATCGCCATCGCTGGCCAATTTGCCGCCGATTAGGGTTCATGTGGAAGATGGTGGCGCTAGGATGGCGCAGGATCACAAGGTTTTGGGAATTGAAGAGCAGTTTGCGCAGATGGGTGTGGGTGTTGCCGCTGGATTGGGGCAGAAGCAAGATGAGGGGCTGGTGGTGCTTTCTTCGCCGCCACCGCCGCCTGTGCCGGTCACTCTATCTGCCCCTGGTGTGGGCGTGGCTGTGAGCACAGCGGTGGTGGGTGGGGAGTACCAGAACAGGGTTTTCTCTGATGATGAGAGATCGGATCATGGCGTGCCTGTGGGTTACAGAAAACCACCGACACCTCAGCCACAGTTGCAGCAGCAACAGTCACAAGCACAGTCTCAGGCGCAAACACAGTCACAGTCACAGCAGCAGCCTCAGTTTCAGCCCAAGTCAACTGGTGTCGTTGATTTGCCTTCTCCAGATTCGGTTTCAAGTGATAGTAGTCTTTCAAATGCAATAAATCGGCAAAAACCTGTGATCTATCAAGACCAGGTTCAGATTCAACCTGGGACTACAAGGGTTCCTAGTAACCCAGTTGATCCAAAACTCAACGTGTCCGATCCTCACGGTCGGATCCAGATACAGCAGCATGTACAGGACCCAGGATACTTGTTGCAACAGCAATTTGAACAACAGCCGCCGCCGCAACAGCCTCAACAGCAACAACAGCAGCAGTTTATTCATGGTACACATTTCATTCATCATGCCCCTCCTGGGGCCGTGCCGATTTCGGCATACTATCCTGTATATCCTTCCCAGCAACAGTCCCACCACCAGGTTTATTACGTTCCTGCTAGACAGCCCCAGGCTTACAACATGCCTGTTCAGCAAACTAACATTGCTGAATCCGCTGCGAACATTCCTTCCAGCCGTCCCCAGAATCCGCCGAATCCTACCACATTGGTTCCACCTTCTGCAGCCTACAACCCCATGAGAAATGCTCCCATGCCTAAGACTGAAATGACTGCAGCTGCATACAGAGCTGTGAGCGCGGGTACCCCTCAATTGGTTCAAGTTCCTACCAGTCAGCATCAGCAACAGTATGTTGCTTACTCCCAGATTCACCACCCTTCTCAGTCCATTCCTCAAAATTCTGCTCCCCCTCCTAATTATGCTTATGATTATGCGGATCCGGCACATGCTCAGATATACTACTCTCAACCTCTGGCACCCTCAATGCCTTCTCAGTACCAAACCATGACAGCAGCTGCCATGGTGATGCCGGACGGTTCCACTCAGCATCCTTCGGAAAACATGAAGCAACAGATAAGAACTTCACAGCCATTATAA 2154 0.5367 MEAQPPTPPHSAPPPPLSSVAPPQPPQQPAPPPPSHLNYPDSVDSSPRSRNTDSWDEPFPPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERTTSLADLSTRLSKTFLNGRPFSLKYQLPNEDLDSLISVTTDEDLDNMIDEYDRTSNNPSLKPSRIRLFLFPTKPESVQSIPPILESSAKSEDWXXXXNALNGAGLLNRGFSDSASVNCLLGLDDDASGNNVDHNSRDPVEASSQPGSFGNGKNPKQEVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVEDGGARMAQDHKVLGIEEQFAQMGVGVAAGLGQKQDEGLVVLSSPPPPPVPVTLSAPGVGVAVSTAVVGGEYQNRVFSDDERSDHGVPVGYRKPPTPQPQLQQQQSQAQSQAQTQSQSQQQPQFQPKSTGVVDLPSPDSVSSDSSLSNAINRQKPVIYQDQVQIQPGTTRVPSNPVDPKLNVSDPHGRIQIQQHVQDPGYLLQQQFEQQPPPQQPQQQQQQQFIHGTHFIHHAPPGAVPISAYYPVYPSQQQSHHQVYYVPARQPQAYNMPVQQTNIAESAANIPSSRPQNPPNPTTLVPPSAAYNPMRNAPMPKTEMTAAAYRAVSAGTPQLVQVPTSQHQQQYVAYSQIHHPSQSIPQNSAPPPNYAYDYADPAHAQIYYSQPLAPSMPSQYQTMTAAAMVMPDGSTQHPSENMKQQIRTSQPL 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60467g00016 717 MobiDBLite consensus disorder prediction 262 283 - -
Stsc60467g00016 717 Pfam PB1 domain 81 170 IPR000270 GO:0005515
Stsc60467g00016 717 MobiDBLite consensus disorder prediction 387 467 - -
Stsc60467g00016 717 MobiDBLite consensus disorder prediction 231 253 - -
Stsc60467g00016 717 SUPERFAMILY CAD & PB1 domains 81 179 - -
Stsc60467g00016 717 Gene3D - 85 168 - -
Stsc60467g00016 717 MobiDBLite consensus disorder prediction 567 603 - -
Stsc60467g00016 717 MobiDBLite consensus disorder prediction 692 717 - -
Stsc60467g00016 717 MobiDBLite consensus disorder prediction 365 522 - -
Stsc60467g00016 717 MobiDBLite consensus disorder prediction 39 58 - -
Stsc60467g00016 717 MobiDBLite consensus disorder prediction 1 38 - -
Stsc60467g00016 717 PANTHER OS05G0427100 PROTEIN-RELATED 38 412 - -
Stsc60467g00016 717 MobiDBLite consensus disorder prediction 220 288 - -
Stsc60467g00016 717 MobiDBLite consensus disorder prediction 477 517 - -
Stsc60467g00016 717 CDD PB1_UP2 69 169 - -
Stsc60467g00016 717 MobiDBLite consensus disorder prediction 1 60 - -
Stsc60467g00016 717 ProSiteProfiles PB1 domain profile. 65 171 IPR000270 GO:0005515
Stsc60467g00016 717 SMART PB1_new 80 171 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60467g00016 Stsc-Chr60467 110066 112872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60467g00016 42 202 MAP Kinase Kinase Kinase AT3G46920 34.731 8.62e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60467g00016 - - gmx:100775954 884.404