Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60467g00008 ATGGAGAAGGTTTGTGAATTCTGCACAGATTCGAGGCCACTTGTTTATTGTAAGGCTGATGCAGCTTATCTGTGTCTATCCTGTGATTCGAAGGTGCATTTTGCGAATGCACTATCCAGCCGGCATCTTCGGACCCTTGTTTGTAACTCTTGTAGATACCATCTTGCTTATGTACAGTGTTTGGATCACAAAATATTAATTTGTCAAGAGTGTGATCAAAAGCTACACAATATCTCTTCACCACATAGAAAAAGAGCTATTAGAAGTTTCATGGGTTGCCCTTCTGCTAAAGACTTTGCGATGCTATGGTGTTTTGGATTGAATGAGATGGAAAACAGCACTTGTGAGGATTTTTTTGCATCTGTTTCATGTGTTTCTGCTGATTCAAATATGGCACAAGCCTCCGGAAGGGCTGGAAGTCGAATATCATCTAAGGCCAAACTTCACGGGGGATCGAGCAGTCGACAAGGTCAGATATTACACAGTGATCAAGAGCGAAAGAAGATTCTGCAGCAGATTATTGACTTAAAACAGCTTCAGCTGAATGGTAATACTAATCAAGCTATAAAGATAAATGGGCCTGAAGAAGAAACAGACTTAACTTCTTCAGCATATCAAACTATCAAGAAATCAGATGTAAAATTCAATAAGCAAGAACAAAATTCAAAGGATGTTGCGGAAAAAGACAGTCACACAGTGGAGCTGAATCCTGAAACTTTGCCTTCTACGTTTTCTCAGCTTGATAGCTTGCCTTCTCCAGTTGTAGATCTTCCCTTAAATGGAGAGTTGTTCTGGACAGGCAAAAGTCCACCCCGAAGTAATCAGTTGTGGTCCCAAAACATACAAGACCTTGGGATATGCGAAGAACTTGTTTGTCGAGACGATTTCAACATACCTGACGTTGATCTAACATTCCAAAACTATGAGGAACTATTTGGAGGAGATCAAGATCCAGTTAGAGCACTGCTTGATGATAATGATGTTTCCTGCTATTCTTTAGAGAAGGATATGTCAATTGACAATCTAAGTGCAATAGAGGATTCTTCGGCAGCCATATCGATTACCATCTCACAAGCAGCTCATGAGAACAAGGATATGGATAGTACCAACGAACAGCATTATCCAAGAAGCACAGATCCTCCACACACAATTCGACCATTCAAGTCAACTCTGTCATCGTCTGTTTCAAGATTCTGTGCTGCAAGCAACCCTACTTATCACAATGACGGTTCCCTATCTCCCTGCAGTGAAGAGAAAGCCTATTTAGGCAATCCAGATGAATTGGAGATATCACATGTGGAGGCCACACAAAAACTCACTCTCATGTATGAAGAGAAGCCAGCTCAACGGAACGAGAAGCATGTTCGACTCCCATCTGGGAAACCTAGAGCTAATGTAAGAAAGAAGGTGAAAGGTACTTCCAAGGCAGAAAGCTATTGA 1440 0.4132 MEKVCEFCTDSRPLVYCKADAAYLCLSCDSKVHFANALSSRHLRTLVCNSCRYHLAYVQCLDHKILICQECDQKLHNISSPHRKRAIRSFMGCPSAKDFAMLWCFGLNEMENSTCEDFFASVSCVSADSNMAQASGRAGSRISSKAKLHGGSSSRQGQILHSDQERKKILQQIIDLKQLQLNGNTNQAIKINGPEEETDLTSSAYQTIKKSDVKFNKQEQNSKDVAEKDSHTVELNPETLPSTFSQLDSLPSPVVDLPLNGELFWTGKSPPRSNQLWSQNIQDLGICEELVCRDDFNIPDVDLTFQNYEELFGGDQDPVRALLDDNDVSCYSLEKDMSIDNLSAIEDSSAAISITISQAAHENKDMDSTNEQHYPRSTDPPHTIRPFKSTLSSSVSRFCAASNPTYHNDGSLSPCSEEKAYLGNPDELEISHVEATQKLTLMYEEKPAQRNEKHVRLPSGKPRANVRKKVKGTSKAESY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60467g00008 479 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
Stsc60467g00008 479 MobiDBLite consensus disorder prediction 136 161 - -
Stsc60467g00008 479 SMART bboxneu5 48 87 IPR000315 GO:0008270
Stsc60467g00008 479 SMART bboxneu5 1 47 IPR000315 GO:0008270
Stsc60467g00008 479 MobiDBLite consensus disorder prediction 443 479 - -
Stsc60467g00008 479 MobiDBLite consensus disorder prediction 445 459 - -
Stsc60467g00008 479 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc60467g00008 479 CDD Bbox1_BBX-like 4 47 - -
Stsc60467g00008 479 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 473 - -
Stsc60467g00008 479 MobiDBLite consensus disorder prediction 136 159 - -
Stsc60467g00008 479 MobiDBLite consensus disorder prediction 361 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60467g00008 Stsc-Chr60467 48965 52575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60467g00008 1 319 C2C2-CO-like Transcription Factor Family AT1G68190 37.152 3.74e-59 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60467g00008 - - adu:107467199 813.913