Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60467g00007 ATGCATAACAAGGAAGCTTGTTCTCCCTCCTCCAATGGCGGATTTGGCGCCAATACTGCCACAGGCGGAGGTCAAATGCAGTCAAATAGCGGATCATTGGCTTCGTTCTATTCTGCTCTCTTGAACGACAATCCGTCGCTGTCGGCGAATAGCAGCAGCTCTCTTTACCCGTACCCTGAGTCTGGAACGCAGATCAACTCGTACGATTCTTGCGTGATACAGAAGCACCAGGACATGGTGAATCGTCACAGCATGTGCCTCAATCGCCTAGTGGAGACTTCCAAGGAGGTCGAATCTCTGCGGCAAGAGAACGCGCATCTCCGTGCGGTGAACAAGGAGCTCCAGAAGCAGCTCAACTTCGTCATCCAGGCTTCGCTGGAGAACCAATTCGGCGGTGGCTCCTCCTGCCAGGGTCAAACGACGCCGTTCGACGTGGTGCATGGATTTCGCGGGTTCCAGATTGGGGAAGGGAAAGAGAATTGCGGTGATTGGAATAGCAACAACAGCAACAACAGCAACAACAATAATAGCAATAACAGTAAGGAGCAAGAAGTTTCGGACGAGAGTCCAACGAGCGTGATCGAGAATAATGGCGTTGAAGTTGAGAGGTTCTCTCTGCCAAAGAGCATATCTGTGAGGTCCAATGGTTACTTGAAGATGGCTCAGACTGCTGCTGCGGCCACTACCACCAACACCACTACCTGTCGCACTAAGCCTACTACTCGCCCACGCGTCTCCTCCACTCCACCTGATGCCGTTCAAAAGGTATATGTGCGTGGAGGGAAGACAGAGGAAGAGCCTCTTGAGATGGTGGTGTATAACCAAGGGATGTTCAAGACTGAGCTGTGCAATAAATGGCAGGAAACAGGGACATGCCCATATGGAGACCACTGCCAATTTGCTCACGGCATCGGGGAGCTTCGCCCAGTGATCCGCCACCCCCGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGTATGTCCATATGGGCATAGATGCCATTTTCGCCACGCACTCACTGAACAAGAGAAAGCTATATCACACCCTAAGTGCAGAACAATCAAGCTCGAAAGATAG 1086 0.5175 MHNKEACSPSSNGGFGANTATGGGQMQSNSGSLASFYSALLNDNPSLSANSSSSLYPYPESGTQINSYDSCVIQKHQDMVNRHSMCLNRLVETSKEVESLRQENAHLRAVNKELQKQLNFVIQASLENQFGGGSSCQGQTTPFDVVHGFRGFQIGEGKENCGDWNSNNSNNSNNNNSNNSKEQEVSDESPTSVIENNGVEVERFSLPKSISVRSNGYLKMAQTAAAATTTNTTTCRTKPTTRPRVSSTPPDAVQKVYVRGGKTEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAISHPKCRTIKLER 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60467g00007 361 SUPERFAMILY CCCH zinc finger 274 309 IPR036855 GO:0046872
Stsc60467g00007 361 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Stsc60467g00007 361 MobiDBLite consensus disorder prediction 160 192 - -
Stsc60467g00007 361 SUPERFAMILY CCCH zinc finger 311 345 IPR036855 GO:0046872
Stsc60467g00007 361 MobiDBLite consensus disorder prediction 229 248 - -
Stsc60467g00007 361 FunFam zinc finger CCCH domain-containing protein 15-like 271 310 - -
Stsc60467g00007 361 Coils Coil 90 117 - -
Stsc60467g00007 361 SMART c3hfinal6 315 342 IPR000571 GO:0046872
Stsc60467g00007 361 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Stsc60467g00007 361 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Stsc60467g00007 361 ProSiteProfiles Zinc finger C3H1-type profile. 315 343 IPR000571 GO:0046872
Stsc60467g00007 361 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 350 IPR045877 GO:0003729
Stsc60467g00007 361 Gene3D - 272 310 - -
Stsc60467g00007 361 Gene3D - 311 347 - -
Stsc60467g00007 361 MobiDBLite consensus disorder prediction 229 249 - -
Stsc60467g00007 361 FunFam Zinc finger protein 36, C3H1 type-like 1 311 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60467g00007 Stsc-Chr60467 43663 46728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60467g00007 72 350 C3H Transcription Factor Family AT1G68200 51.761 9.46e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc60467g00007 zf-CCCH 2.9e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60467g00007 K18753 - gmx:100796550 461.07