Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60467g00001 ATGGGCTTACAAAACCAGCTAAACGACGTGTCGTCTGGTTCGATTCCACTGCTGCTGATTGCGCACATAGCCACCTGCGTCAACTACCTCCGTTCCATGCTCTTCGCTCTTCTTCAAACCCTAGGTCTCTCACGGCTCCACACGCACCAGATCGTCGACGATGGATTCTTCGCCACCGTCGGATCCGGACTCGCCGGACTCATCATGCTCTCCGATCAGCTCGCCGCTAACAACCGATTCTTCTACAACTACGCCGTCGTCGACCGCGCCGACTCCGACGGCTGCGTCGTGTGCCAGAACAACTTCAAGGAAGGGGAACAGGTACGGATGCTGCCGTGCCGCCACGTCTTCCACCGCCACTGCTTCGACGGATGGCTCCATCACTACAAGTTCAACTGCCCCCTCTGTCGCTACCCGCTTCTCTCTGAAGAGCGCGTGGCCCTCACGGAGCGCCGCGTCGGTCGTGAACTCGTTTCGTGGTTCTCCCTTCGGTGA 495 0.5899 MGLQNQLNDVSSGSIPLLLIAHIATCVNYLRSMLFALLQTLGLSRLHTHQIVDDGFFATVGSGLAGLIMLSDQLAANNRFFYNYAVVDRADSDGCVVCQNNFKEGEQVRMLPCRHVFHRHCFDGWLHHYKFNCPLCRYPLLSEERVALTERRVGRELVSWFSLR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60467g00001 164 SUPERFAMILY RING/U-box 83 142 - -
Stsc60467g00001 164 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Stsc60467g00001 164 CDD RING-H2_RHA2B 93 139 - -
Stsc60467g00001 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 146 IPR013083 -
Stsc60467g00001 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 82 146 - -
Stsc60467g00001 164 Pfam Ring finger domain 95 137 IPR001841 -
Stsc60467g00001 164 SMART ring_2 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60467g00001 Stsc-Chr60467 19012 20213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60467g00001 1 163 C3H Transcription Factor Family AT1G15100 49.693 6.10e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60467g00001 K16282 - gmx:100803789 255.373