Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60466g00011 ATGGGAGATGAAAGCATAGCAGCAAACGAAAGCAATCACAGCATGAACATGGAAGAAGAATTACTTCAAGGCGTTGAAGAAAGAGATCCAGAAAGCAACACCAATAATAACAATAATCCATTAAACCAGCCACTCCTCAAGAGGAACAGAACTCTCTCCTCCAATCCACTCGCTCTCGTCGGAGCCAAAGTTTCCTATATAGAAAGCTTGGACTACGAGATCAATGAGAATGATCTGTTCAAGCAAGATTGGAGAACGAGGTCAAGAGCTCAGGTGTTGCAGTACATATTCTTGAAATGGTCACTTGCGTTTCTCGTTGGTCTTCTCACTGGTATCATAGCCACTCTCATCAACCTTGCTATTGAGAACATTGCAGGCTACAAGCTTCTCGCCGTTGTTCAGTACATCCATAAAGAACGGTACATGGCGGGTTTTCTTTATTTCACCGGTATAAATTTCCTATTAACGTTCATGGCTGCGATCCTGTGTGTGTGTTTTGCACCAACAGCAGCTGGGCCGGGAATACCAGAAATCAAAGCTTATCTTAATGGAGTTGATACTCCCAATATGTACGGTGCCTCAACATTGTTTGTCAAGATTATTGGAAGCATTGGAGCTGTTGCTGCAGGCCTAGATTTAGGAAAAGAAGGTCCATTGGTTCACATTGGTGCCTGCATTGCTTCCTTGTTAGGCCAAGGAGGCCCTGACAACCACCGGATCAAGTGGCGCTGGCTGCGATACTTCAACAACGACCGCGACCGCCGTGATCTCATTACCTGCGGCGCCTCTTCCGGGGTTTGCGCGGCTTTCAGGGCCCCCGTCGGCGGAGTCCTCTTCGCTCTCGAAGAGGTGGCAACTTGGTGGAGAAGTGCACTACTTTGGAGAACTTTCTTCAGCACTGCTGTGGTGGTGGTTGTGCTGAGAGCCTTCATTGAACTCTGCCATGAAGGCAAGTGTGGCCTTTTTGGTGAAGGAGGGCTTATAATGTTTGATGTGAGCAATGTTAGTGTCAGGTACCATGTCATGGATATTATCCCTGTTGCCTTAATTGGAGTCATTGGAGGTGTTTTGGGAAGCCTTTATAACCATGTTCTTCACAAAGTCCTCAGGCTCTACAATCTCATCAATCAGAAAGGAAAAGTTTATAAGCTGCTACTGAGTCTTTCAGTAGCATTGTTCACATCAGCATGCCAATATGGTCTTCCATTCCTTGCGAAATGCACTCCCTGCGATCCGTCGCTACCGAAATCGGTTTGTCCCACCAATGGAAGATCTGGAAATTACAAACAATTCAACTGTCCAGATGGGCACTACAATGATCTTGCCACTCTGCTTCTCACCACCAATGATGATGCTGTTAGAAACATATTCTCTTCCAACACCCCTAATGAATTCCACCCAACCTCTATCCTAATCTTCTTTGCACTCTATTGCATATTAGGACTAGTCACCTTCGGCATTGCCGTCCCCTCCGGCCTCTTCCTTCCCATCATTCTCATGGGCTCCGGCTACGGCCGCCTTCTAGCCATGCTCATGGGGCCTCACACAAACATTGATCATGGTTTGTTTGCAGTTCTTGGAGCAGCCTCTCTCATGGCTGGTTCAATGAGGATGACTTTTCAACCCAAGCATCTATGA 1638 0.4676 MGDESIAANESNHSMNMEEELLQGVEERDPESNTNNNNNPLNQPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRTRSRAQVLQYIFLKWSLAFLVGLLTGIIATLINLAIENIAGYKLLAVVQYIHKERYMAGFLYFTGINFLLTFMAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGASTLFVKIIGSIGAVAAGLDLGKEGPLVHIGACIASLLGQGGPDNHRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHEGKCGLFGEGGLIMFDVSNVSVRYHVMDIIPVALIGVIGGVLGSLYNHVLHKVLRLYNLINQKGKVYKLLLSLSVALFTSACQYGLPFLAKCTPCDPSLPKSVCPTNGRSGNYKQFNCPDGHYNDLATLLLTTNDDAVRNIFSSNTPNEFHPTSILIFFALYCILGLVTFGIAVPSGLFLPIILMGSGYGRLLAMLMGPHTNIDHGLFAVLGAASLMAGSMRMTFQPKHL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60466g00011 545 MobiDBLite consensus disorder prediction 28 46 - -
Stsc60466g00011 545 Gene3D Clc chloride channel 91 541 - -
Stsc60466g00011 545 FunFam Chloride channel ClC3 91 408 - -
Stsc60466g00011 545 MobiDBLite consensus disorder prediction 24 46 - -
Stsc60466g00011 545 PRINTS Chloride channel signature 199 218 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc60466g00011 545 PRINTS Chloride channel signature 521 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc60466g00011 545 PRINTS Chloride channel signature 489 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc60466g00011 545 PRINTS Chloride channel signature 168 185 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc60466g00011 545 PRINTS Chloride channel signature 263 282 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc60466g00011 545 CDD ClC_6_like 68 539 - -
Stsc60466g00011 545 Pfam Voltage gated chloride channel 156 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc60466g00011 545 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 24 540 - -
Stsc60466g00011 545 PRINTS Plant CLC chloride channel signature 73 81 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc60466g00011 545 PRINTS Plant CLC chloride channel signature 284 292 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc60466g00011 545 PRINTS Plant CLC chloride channel signature 316 323 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc60466g00011 545 PRINTS Plant CLC chloride channel signature 298 308 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc60466g00011 545 PRINTS Plant CLC chloride channel signature 441 457 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc60466g00011 545 SUPERFAMILY Clc chloride channel 77 540 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60466g00011 Stsc-Chr60466 42598 45217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60466g00011 26 539 Ion Channels AT3G27170 79.767 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60466g00011 K05016 - gmx:100788620 918.302