Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60466g00007 ATGCCCAAATCCAAGAGAAATAGACCAGTTACGCTTTCCAAAACCAAGAAAAAGGGAAGGGAACACAAAGAGGCCATTGTCAATTCGATCAAGGAGGCTGCTGAGAAATACTCCTCAGTTTATGTGTTCTCTTTTGAGAACATGAGGAATCAGAAATTCAAGGAGTTCAGGGAGCAGCTCAAATCGAGCAGCAGATTCTTTTTGGGTTCTAACAAAGTTATGCAGGTCTCTCTTGGTCGGTCTCCTGCTGATGAAGTCAGACCCGGTCTTCATAAGGTTTCCAAGTTATTGCGTGGAGATTCTGGCATGTGTTTTACCAACTTATCAAAAGAAGAAGTTGAAAGGCTTTTTAATCAATTTGAAGAATATGATTTTGCAAGAACAGGAAGCATTGCCACTGAAAAGGTTGATCTTAAAGAGGGTCCTCTAGAGCAGTTCACGCATGAGATGGAGCCCTTTCTCCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGAGTTGTGGAGCTTGTTTCAGATTTTGTTGTTTGTGAGGAAGGGAAGCCCTTGTCACCTGAGGCAGCTCGGATACTGCGCTTGTTGGGAATCAAGATGGCTTCATTCCGGCTGCACCTGATCTGCAGGTGGACTCCGGATGATTTCGAACTTTACATCGATGGGCCTGAAGATTCAGATGTTGAATGCTCATAG 690 0.442 MPKSKRNRPVTLSKTKKKGREHKEAIVNSIKEAAEKYSSVYVFSFENMRNQKFKEFREQLKSSSRFFLGSNKVMQVSLGRSPADEVRPGLHKVSKLLRGDSGMCFTNLSKEEVERLFNQFEEYDFARTGSIATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEAARILRLLGIKMASFRLHLICRWTPDDFELYIDGPEDSDVECS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60466g00007 229 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 220 - -
Stsc60466g00007 229 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
Stsc60466g00007 229 Gene3D - 30 211 IPR043141 -
Stsc60466g00007 229 MobiDBLite consensus disorder prediction 1 22 - -
Stsc60466g00007 229 FunFam Ribosome assembly factor mrt4 29 132 - -
Stsc60466g00007 229 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Stsc60466g00007 229 MobiDBLite consensus disorder prediction 1 16 - -
Stsc60466g00007 229 CDD Ribosomal_P0_like 21 184 IPR033867 GO:0000027
Stsc60466g00007 229 Gene3D - 125 198 IPR043164 -
Stsc60466g00007 229 FunFam Ribosome assembly factor mrt4 125 198 - -
Stsc60466g00007 229 Pfam Ribosomal protein L10 19 120 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60466g00007 Stsc-Chr60466 31396 33784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60466g00007 15 227 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 22.624 1.25e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60466g00007 K14815 - gmx:100500064 418.313