Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60466g00004 ATGTTCATGTTCATCCCAGGCACTCACGAGCTCCAATCAGATCAAACCCAAGCCTTGTTTCAACTAAGGAAATTACTTGAATACCCTCCCTCCTTGCAAGCCTGGCAAAATGAAAATTACAATGCTGACCTCTGTACCCTTTCTTCCTCCCCAAATTTGACCGTTAAATGCGAGGATGATTCAGTTACTGAGCTTAAAATCTTTGGAGATAAATCTCTGAAGCCATCTACCTTCAACGGTTACGCAATTCCCAATCATACACTAACCCTAGATTTCTCCATTGATTCATTTTTCACCACACTGACAAAGCTAACTAGCTTGAGGGTTCTTAGCTTAGTGTCCTTAGGGTTATGGGGTCCACTACCTGAAACAGTTCATCGTTTGTCTTCGCTTGAGGTTTTGGATTTGAGTTCAAATTTCTTGTTTGGTGCTTTGCCACCAAGATTATCCACCATGGTTAAGCTTTACACTGTAACACTTGATGATAATTACTTTAATGCCACTCTCCCTGATTGGTTTGGTTCTTTCTCTAATCTAACTATGTTGAGTTTGAAGAGCAATCAATTCAAGGCTAAATTCCCTGATTCACTTTGCAAAATTCAGACACTTGAAGTTATTTCCATGCCAAACAATGAGCTTCATGGTGAATTGCCTGATTTAAGTTCTCTGACTGGCTTACATGTTTTGGATTTGAGGGAAAATGATTTAGATTCTCAGCTACCATTGTTGCCTAAATCAGTAGTTACAGTTTTGTTGAGCAATAATTCTTTACATGGAGAGATTCCTAAGCAGTTTGGTGAGTTGGATCATCTTCAGCATTTAGATCTTTCATCAAATTACCTAAGCAGGGTTCCACCACCTTCCTTGTTCTCATTGCCAAACATTAGTTATTTGAATCTGGCAAACAATGTGTTAAGTGGTTGCATTCCGGGGAAGCTTACTTGTGGCGGCAAACTCGGGTTTGTGGATATTTCTGGTAACAAGTTGAATGGTGGACTGCCTTCTTGCTTGGCTAATACATCTGATAGTAGAGTTGTTAGATATGGTGGAAACTGTTTATCTGTCGACAATGTGGGCTCGCACAATCAGCGACGAGGGTCTTATTGCGACGAATCAGGCATCGAGGCGTGGAAAGTAGCTGTGGCGGTGGCCTTGGTCGTCGGACTTGTGATTGCGATTCTTGTGTCTGGAGTTTTCTTGTGTAAAAAATGTCATCAGAGGAAGATAATTAGGCATGATTTGTTGCCTAAGATTCTCCAAGGAAACTCCACCCCAGGAGTTTCCTCTGAAATCCTTGCAAATGCTAGATTCATTTCTCAAACAGTGAAGCTTGGTTCACAAGCTACTACAACCTGTCGGCAGTTTTCAATAGAAGAGTTGAAGGAAGCTGCAAGAAACTTTGACATTTCAACTTATGTTGGTGAAGGGTCCATAGGGAAGCTGTACAAAGGTAAACTAGAGAATGGACCCCACGTGATGATAAGATCTTTGCCTCTGTCGAAGAAATGCTCGATTCAAAATCTTAAGGCTCGGTTGGATTTGCTCTCAAAGCTTCAACACCCAAATTTGGTTAGCCTTTTGGGTCATTGTATTGAGTTCCGGGGACATGAGGATTCCAGTTCCAACAAACTTCATCTTGTGTATGAGTATGTGCCGAATGGAAATTATCGCAGCTATTTATCAGAGTTTTCAGCAGGGAAGGCACTTAAATGGTCTGATAGACTTGCAATTCTAATTGGAGTTGCTAAAGCTGTGCATTTCCTACATACTGGTGTCATCCCTGGTTGTTTTGAAAACCAGCTAAAGACAAGGAATATTTTGCTCGATGAGCATCTCATTCCGAAATTAAGCGACTACGGAATTGCCATCATTAGAGAAGAAATGGACAAGCATGAGGCAAAGGGAGAAAAACTAAAATCATGCCAGAGGACAAAAATGGAGAGTGATGTTTATAATTTTGGGTTCATATTGCTTGAATCGCTTGTTGGACCGATAGCAAGCGACAAAGGAGAAACATTCTTTATACATGAAAAGGCATCCTTTGGCAGCCAAGATGGTAGAAGAAAGATTGTGGATCCATTAGTACTAACCACTTGCTCGCAAGAGTCATTATCAATCGCGATATCTATAACAACGAAATGCATATCGCCGGAATCTTCATCTCGTCCCTCCTTTGAGGATGTCCTATGGAACTTGCAGTATGCTGCTCAAGTCCAAGCCACTTCAGAGGCAGATCAGAAATCAGATTCAAACATGACAGGTCCAAGTTTGTAG 2274 0.4125 MFMFIPGTHELQSDQTQALFQLRKLLEYPPSLQAWQNENYNADLCTLSSSPNLTVKCEDDSVTELKIFGDKSLKPSTFNGYAIPNHTLTLDFSIDSFFTTLTKLTSLRVLSLVSLGLWGPLPETVHRLSSLEVLDLSSNFLFGALPPRLSTMVKLYTVTLDDNYFNATLPDWFGSFSNLTMLSLKSNQFKAKFPDSLCKIQTLEVISMPNNELHGELPDLSSLTGLHVLDLRENDLDSQLPLLPKSVVTVLLSNNSLHGEIPKQFGELDHLQHLDLSSNYLSRVPPPSLFSLPNISYLNLANNVLSGCIPGKLTCGGKLGFVDISGNKLNGGLPSCLANTSDSRVVRYGGNCLSVDNVGSHNQRRGSYCDESGIEAWKVAVAVALVVGLVIAILVSGVFLCKKCHQRKIIRHDLLPKILQGNSTPGVSSEILANARFISQTVKLGSQATTTCRQFSIEELKEAARNFDISTYVGEGSIGKLYKGKLENGPHVMIRSLPLSKKCSIQNLKARLDLLSKLQHPNLVSLLGHCIEFRGHEDSSSNKLHLVYEYVPNGNYRSYLSEFSAGKALKWSDRLAILIGVAKAVHFLHTGVIPGCFENQLKTRNILLDEHLIPKLSDYGIAIIREEMDKHEAKGEKLKSCQRTKMESDVYNFGFILLESLVGPIASDKGETFFIHEKASFGSQDGRRKIVDPLVLTTCSQESLSIAISITTKCISPESSSRPSFEDVLWNLQYAAQVQATSEADQKSDSNMTGPSL 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60466g00004 757 Pfam Protein tyrosine and serine/threonine kinase 470 729 IPR001245 GO:0004672|GO:0006468
Stsc60466g00004 757 Gene3D Transferase(Phosphotransferase) domain 1 551 754 - -
Stsc60466g00004 757 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 430 550 - -
Stsc60466g00004 757 SMART LRR_typ_2 268 292 IPR003591 -
Stsc60466g00004 757 SMART LRR_typ_2 223 246 IPR003591 -
Stsc60466g00004 757 SMART LRR_typ_2 128 152 IPR003591 -
Stsc60466g00004 757 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 12 245 - -
Stsc60466g00004 757 SUPERFAMILY L domain-like 101 353 - -
Stsc60466g00004 757 SUPERFAMILY Protein kinase-like (PK-like) 448 732 IPR011009 -
Stsc60466g00004 757 Gene3D Ribonuclease Inhibitor 245 369 IPR032675 -
Stsc60466g00004 757 ProSiteProfiles Protein kinase domain profile. 467 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60466g00004 757 ProSiteProfiles Leucine-rich repeat profile. 270 291 IPR001611 GO:0005515
Stsc60466g00004 757 Gene3D Ribonuclease Inhibitor 12 244 IPR032675 -
Stsc60466g00004 757 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 247 374 - -
Stsc60466g00004 757 PANTHER UNNAMED PRODUCT 99 663 - -
Stsc60466g00004 757 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515
Stsc60466g00004 757 Pfam Leucine rich repeat 248 305 IPR001611 GO:0005515
Stsc60466g00004 757 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 551 751 - -
Stsc60466g00004 757 Gene3D Phosphorylase Kinase; domain 1 429 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60466g00004 Stsc-Chr60466 15947 19880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60466g00004 3 680 Miscellaneous Gene Families AT5G14210 53.757 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Stsc60466g00004 PK_Tyr_Ser-Thr 6.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60466g00004 - - gmx:100799183 1103.2