Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60465g00034 ATGTTGTGTGCTTGCTCCGGGGAGCAATTCAAATTGGAGGAGGCGCCGCCACAGTCACCGGATTCTCTGGCGACGAGGGATTTCTCGGCCAGTGGACTTTCTTCCAGGACTGCTGATTGGGAACCCAAAATTGATGATACCCAAGTTGAAGAAGTAGAGTCCACTCTTAAAGAAGCTCTTTCCTTAAACTATGAGGAAGCCAGGGCTTTGCTGGGAAGGCTTGAGTACCAAAGAGGGAACTTTGATGCTGCCCTTCAAGTATTTCAAGGCATAGACATCAAGAGTTTGACCCCTAGGATGGTCAGAGCGATAGCTGAAAGAACCAAGCAAAGAAAACCACGTTCCAAGGCAGATACCGTGGTTCCAAATGTGATGTCATTGCATTCAGTAAGCCTCCTTCTTGAGGCGATTTTGCTTAAGGCAAAATCATTGGAGGAACTTCACCGATATATTGAGGCTGCAAAGGAGTGTAGAATAATTGTGGATACAGTTGAATCTGCACTTCCTAAGGGAATGCCTGAGCGTATTGGTGAAGATTGTAAGTTGCAAGACATGTTCCACAGCGCATTAGAGTTGCTTCCAAACCTATGGATCAAAGCAGGATTTTTAGACGAAGCTGTTACTGCATATCGTCGTGCCCTGGTCAAGCCATGGAATTTGGAACAACAGAGATTGGCTACGGTGCAAAAAGACTTAGCTAAGACACTACTCTACAGTGGTGTTGAAGTAAGTCTACCCCCTCAATTGCAAGTGTGGGGTCCAACAACACCCAAGAGTAACATTGAAGAAGCAATACTTTTGCTGTTAATACTCATGAGCAAGGTGGGAATTCAGGAAATTGAATGGGATGCTGAAATAATGGATCACCTCACTTTCGCTCTTTCAGTTTCTGGGACGTTTGAGTCATTGACAGTTCACATAGAGCAGATCCTCCCAGGGATCTATAATCGAGCTGAGAAGTGGTACCTTCTTGCTCTCTGTTATAGTGCAGCAGGACAGAATGAAGTAGCATTGAACCTTCTGAAGAAGGCTTGTGGTAGTTCTGAAGCAAACCAAAGACCCCACTTCCCTTCATTTTTGTTTGGAGCAAAACTGTGTTCCCAAGATCCCATCCATGCTCATGAAGGCATAAACTTTTCACGTGAGGTTATTGATCTAGCCAAGCATCGAAATGAGCATTTCTTGGGTCAAGGCTATAAATTTCTAGGCATGTGCTATGGGGCTGCAGCTAGAATTTCTGTGTTGGATTCTGAAAGAAGTATATTTCAAGGCGAGTCTCTGAACTTTCTAAATCGTGCTGTGGTGAATGGAAATGATGACCCAGAAGCAGTTTTCAGCCTTGGACTAGAAAATGCAAATCAGAGGAATCTGGATGTGGCTTTTGACAACATGATGATGTACTCAGACATGACTGTTGGAAGCTCAGGAAGAGGTTGGCGGCTGTTAGCACTTATAGTATCCGCACAGCAGCGGATTAAGGATGCTGAAACAATAGTTGATTTTGCTTTGGATGAGGCTGGGAGGATGGATCAGCTAGAACTTCTAAGATTGAAAGCAGTACTTCAAATTGCTCAACAGAAACCAAAACAAGCAGTGGAGACCTATAGAATCTTGTTGTCTCTAATTCATGCAAAAGAGGAGCATTGGCGTCAAGATAAGAAACTCGGTCAAGCAATAGGATTCATCAGGCATGAGGCAATAAAAGAGAAGAATTTGGAAAGGGAAGCCTGGCAGGATTTGGCTACTATTTATGCAGATGTTGGTTCCTTTCTTGATGCAAAGGCTTGTATTGACAAAGCTCAATTGATAGAATTTTTCTCTCCAAGAAGTTGGCATGTTACTGGGAGGTTATTGGAAGCTCAATCATTATACAAGGAAGCTTTTGTTTCCTTCTTGATCTCACTATCGATAGAGCCAGATTACATTCCCAGTATTGTTTCAACTGCAGAATTGTTTCTGAAACTTGGTATGCAGTCACTTCCAATTGTGAGAAGCTTTTTAATGAATGCATTGCGATTAGATCCCACAAACCATGATGCATGGTTCAACCTGGGAGTAGTTTCAAAAAGCGAAGGTTCCTTGCAGCAAGCAGCAGATTTCTTTCAAGCTGCATATGAACTGAAGCTTTCGGCTCCGGTGCAAAAGTTCGAGTAA 2154 0.4331 MLCACSGEQFKLEEAPPQSPDSLATRDFSASGLSSRTADWEPKIDDTQVEEVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKSLTPRMVRAIAERTKQRKPRSKADTVVPNVMSLHSVSLLLEAILLKAKSLEELHRYIEAAKECRIIVDTVESALPKGMPERIGEDCKLQDMFHSALELLPNLWIKAGFLDEAVTAYRRALVKPWNLEQQRLATVQKDLAKTLLYSGVEVSLPPQLQVWGPTTPKSNIEEAILLLLILMSKVGIQEIEWDAEIMDHLTFALSVSGTFESLTVHIEQILPGIYNRAEKWYLLALCYSAAGQNEVALNLLKKACGSSEANQRPHFPSFLFGAKLCSQDPIHAHEGINFSREVIDLAKHRNEHFLGQGYKFLGMCYGAAARISVLDSERSIFQGESLNFLNRAVVNGNDDPEAVFSLGLENANQRNLDVAFDNMMMYSDMTVGSSGRGWRLLALIVSAQQRIKDAETIVDFALDEAGRMDQLELLRLKAVLQIAQQKPKQAVETYRILLSLIHAKEEHWRQDKKLGQAIGFIRHEAIKEKNLEREAWQDLATIYADVGSFLDAKACIDKAQLIEFFSPRSWHVTGRLLEAQSLYKEAFVSFLISLSIEPDYIPSIVSTAELFLKLGMQSLPIVRSFLMNALRLDPTNHDAWFNLGVVSKSEGSLQQAADFFQAAYELKLSAPVQKFE 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60465g00034 717 SUPERFAMILY TPR-like 481 708 IPR011990 GO:0005515
Stsc60465g00034 717 Coils Coil 485 505 - -
Stsc60465g00034 717 Coils Coil 57 77 - -
Stsc60465g00034 717 Gene3D Tetratricopeptide repeat domain 664 713 IPR011990 GO:0005515
Stsc60465g00034 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Stsc60465g00034 717 Gene3D Tetratricopeptide repeat domain 43 243 IPR011990 GO:0005515
Stsc60465g00034 717 Gene3D Tetratricopeptide repeat domain 260 546 IPR011990 GO:0005515
Stsc60465g00034 717 Pfam Tetratricopeptide repeat 670 706 - -
Stsc60465g00034 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Stsc60465g00034 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Stsc60465g00034 717 SMART tpr_5 574 607 IPR019734 GO:0005515
Stsc60465g00034 717 SMART tpr_5 318 351 IPR019734 GO:0005515
Stsc60465g00034 717 SMART tpr_5 512 545 IPR019734 GO:0005515
Stsc60465g00034 717 Gene3D Tetratricopeptide repeat domain 562 660 IPR011990 GO:0005515
Stsc60465g00034 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60465g00034 Stsc-Chr60465 149126 152233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60465g00034 1 716 Calmodulin-binding Proteins AT1G27460 58.611 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60465g00034 K21843 - gmx:100799251 1135.94