Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60465g00032 ATGTCACTCAGTGGCAAACCCTATCCTGAGATCAACATTGAAGGGGAGCATTGCCCTGAAGCGGTGGTTGAATGGTACCAATGTTCTGCGTCAACGGATCAGAGACGCGATCATGAACTGAGCTTGAAGGCGAAGAAACACCTCATTTCTTTGGGTTGGATCTTTTCTTATTGCGACAAGAAAACTCGCTGGGAGCTTCGTTACAAATCCCCTCTTGGTAAGACCTACATTTCTCTCAGAACCGCATGCAAAGCCTGCATTGACCACAATAATCTCCTTCCTTTGCTTCTTCAATCTTCTTCTACTTCCAATTCATCATCACAAGAATCTCAACCTCAATCTCGTGCTGCTGCATTCTTTTCTTCTATTCAAGAACCACCAAATTCGAAGAAAGGAACTGGTAGTAGGCCTCGGAAACGCAAGAATCCGAGAGATGAGGAGGATTCCGGTGACGACGACGACGATGAGGATTGGATTCTTTCTCCTAATCGAGTCTCCGGTTTTGTAAGTCCTCCTTCTCGTCCCCGTGTTGTTGCCGGCGGTGGTCGTCGTCGTGATTTTGGTGAAAATGTTAATGCTTCTAGAAAAGAAATGAGGGCACGGAGTTCTTGTGGTAACAGTGATGTGCCGTCGTTTCGGAATCCAAGAACGATTCTTTCTTGGCTGATTGATAACAATGTGGTGGCCATGGATGCTTGGGTTTACTGCCGTGGAGGGAAAGATAATAGCTTGGTTAAGAGAGGGAAGCTGAATCGTTCTGGTATTGTCTGTCATTGTTGTGATTCTTTGTTCACACTCACTCAATTTGAGGCTCATGCTGGTTGCAATAAGCACCATCCCTCTGCTACTATCTTCTTGGAAGAAGATAGAAGGTGTTTGATGGATTGCCAGAGACAAGCATTGATGATGATCAATGCTAAGCAGGGAAATGGAAGTCACAACAATGGGGATGAGCATGTGAAGAAAAGTCCTAAACGTGAAAATGATTCCATTTGTTCAATTTGTCTCAATGGGGGTTTGATTCTTCTCTGTGATCATTGTCCGTCGTCGTTCCACGCCAGCTGTATCGGGCTCGATCGGGTTCCGGATGGTGATTGGTTCTGCCCTTTATGCTCTTGCAGAATTTGCAACCGTCCAGAGTGCAGACAAGATTATTCTGCAGGAGAAAATCATTTGGCTAACAATGTTATAGCTTGTGATCAGTGTCATCTTAAATTCCACTTTGGATGTTTAGCTTCTAGAGGCTTTACTTCACTGGAAATGGAAAGAGATTCCAATGGGAATTGGTTCTGCAGTGAAGCTTGTGAGGATATATTTTGCAAACTGCATGACATGTTGGAAAAACCAATTGTTGTGGGTCATGGTAATCTAACTTGGACATTGTTGAAGAGCATCATGGATAGTACTAATAACAATGATGATAATGGAGGAATTAGTGAGATGGAGAGCAAGCTGAATGTGGCACTTGGAGTAATACATGAGTGTTTTGAGCCCATCGTGGATACTCTACATGGAAAAGACATTGCTGCAGATGTTATGTTCAGCAGAGAGTATTGGCTGCAACGTTTGAACTTTAAAGGGTTCTACACTGTGATTCTTGAGAGGAATGATGAGGTGATCTCTGTTGCAAACACAAGGATTTATGGCCAAAAGGTTGCAGAAGTGCCACTTATTGCGACCAGGGAGCGGTTCCGAAAGCGGGGAATGTGTCGAGCTCTGATGAAACAGCTTGAGAAGCTGTTGGTTGAGTTGGGGGTTGAGAGGTTGGTTTTGCCTGCTTCTCCTCATGTGATAGAAACTTGGACAAACTCATTCGGATTTGCAAAAATGACAGAGTCAGAACAGTATGAGTGTTTACGGTATGCTCTTGTAAATTTTCCTGACACAACATTGTGTCACAAATCATTGAAGCAACCTTTGATGCTGCTTGGGGCCTAA 1938 0.4396 MSLSGKPYPEINIEGEHCPEAVVEWYQCSASTDQRRDHELSLKAKKHLISLGWIFSYCDKKTRWELRYKSPLGKTYISLRTACKACIDHNNLLPLLLQSSSTSNSSSQESQPQSRAAAFFSSIQEPPNSKKGTGSRPRKRKNPRDEEDSGDDDDDEDWILSPNRVSGFVSPPSRPRVVAGGGRRRDFGENVNASRKEMRARSSCGNSDVPSFRNPRTILSWLIDNNVVAMDAWVYCRGGKDNSLVKRGKLNRSGIVCHCCDSLFTLTQFEAHAGCNKHHPSATIFLEEDRRCLMDCQRQALMMINAKQGNGSHNNGDEHVKKSPKRENDSICSICLNGGLILLCDHCPSSFHASCIGLDRVPDGDWFCPLCSCRICNRPECRQDYSAGENHLANNVIACDQCHLKFHFGCLASRGFTSLEMERDSNGNWFCSEACEDIFCKLHDMLEKPIVVGHGNLTWTLLKSIMDSTNNNDDNGGISEMESKLNVALGVIHECFEPIVDTLHGKDIAADVMFSREYWLQRLNFKGFYTVILERNDEVISVANTRIYGQKVAEVPLIATRERFRKRGMCRALMKQLEKLLVELGVERLVLPASPHVIETWTNSFGFAKMTESEQYECLRYALVNFPDTTLCHKSLKQPLMLLGA 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60465g00032 645 MobiDBLite consensus disorder prediction 179 196 - -
Stsc60465g00032 645 SMART PHD_3 373 435 IPR001965 -
Stsc60465g00032 645 SMART PHD_3 331 372 IPR001965 -
Stsc60465g00032 645 SUPERFAMILY FYVE/PHD zinc finger 323 382 IPR011011 -
Stsc60465g00032 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 373 IPR013083 -
Stsc60465g00032 645 ProSiteProfiles Zinc finger PHD-type profile. 329 374 IPR019787 -
Stsc60465g00032 645 MobiDBLite consensus disorder prediction 100 207 - -
Stsc60465g00032 645 Pfam PHD-finger 331 373 IPR019787 -
Stsc60465g00032 645 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 512 624 IPR016181 -
Stsc60465g00032 645 PANTHER PHD FINGER PROTEIN 12 19 638 IPR042163 GO:0003714|GO:0045892
Stsc60465g00032 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 437 IPR013083 -
Stsc60465g00032 645 Pfam Tify domain binding domain 248 300 IPR032308 -
Stsc60465g00032 645 Pfam Acetyltransferase (GNAT) family 521 607 IPR000182 GO:0016747
Stsc60465g00032 645 Gene3D - 488 620 - -
Stsc60465g00032 645 SUPERFAMILY FYVE/PHD zinc finger 373 432 IPR011011 -
Stsc60465g00032 645 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 491 624 IPR000182 GO:0016747
Stsc60465g00032 645 MobiDBLite consensus disorder prediction 100 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60465g00032 Stsc-Chr60465 137090 139040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60465g00032 198 581 PHD Transcription Factor Family AT5G58610 42.526 4.11e-90 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc60465g00032 Acetyltransf_1 1.8e-06 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60465g00032 - - aip:107608518 884.019