Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60465g00029 ATGGACGATCTTTCTTCGTGCAGCCTTCTTTGTGAAGAGAATGAAACGTTTTTGGAATTGGAAGGAGATGAAGAAGAATGCTCTGCTGCCCTTCTTCAATCAGGAATAATGGATCATCATCAAGGTGTTTCAGAAGATGAGGATTTGGGGGTTCTGCTTGAGAGAGAGATCCGTATTGGGTTCAAAAAAGATGACACTTTTGTGTTTGAAGATTGGATGAAACTTTCCCGAATGGATGCAATCAATTGGATTCTCAAAACAAGAGCAACACTGGGATTTCGTTTTCAAACGGCTTATTTGTCTGTCACATATTTCGATCGGTTCCTTTCCAAGCGGTTCATTGATAGTGAAAAGGAGTGGGCAATCAGGTTATTATCAATTGCATGCCTTTCTTTGGCTGCAAAGATGGAAGAATGCAATGTGCCTGAGCTAACAGTCTTTCAGTCAAAAGATTACTGCTTTGAGAGCAAAGTGATTAGGAGAATGGAGATTTTGGTTCTAACCACATTGGATTGGAATATGAGCATTATTACCCCCTTTGATTTCCTTCCATTTTTCATTTCAAAGTTCTTCAATCAAATTCAACCCCCACCAACTACCACTTTTTCCAACACCATGCACCTCATCTTCACCACAATCAAAGAGGTAAACATAATGGATCACAAACCATCTGTTGTTGCAGCTGCTGCTACTTTGGTGTCATTGGATCAGCAACTAACCATAGAAGCTCTAGAGTTGAAGATTAGTTCAATTCCTCAACATAGGTTTCTTGATCCTAAAGATGTATTTTCATGCTACAATCTAATTCAAAGATTACAGGCAGAGAATAACACAAGAAGAGACAGTAATGTGTTGCATACGCCTACTCCTTCAACAATTGACATGATAGAGAGCTCTCTAGTTACTTCTTCTGCTGCTGTGACAAAGAGGAGAAGACTCTCATTTAATGATGATCAAAGTCCTGAAGGGAAGGGACTTGACTAG 984 0.3963 MDDLSSCSLLCEENETFLELEGDEEECSAALLQSGIMDHHQGVSEDEDLGVLLEREIRIGFKKDDTFVFEDWMKLSRMDAINWILKTRATLGFRFQTAYLSVTYFDRFLSKRFIDSEKEWAIRLLSIACLSLAAKMEECNVPELTVFQSKDYCFESKVIRRMEILVLTTLDWNMSIITPFDFLPFFISKFFNQIQPPPTTTFSNTMHLIFTTIKEVNIMDHKPSVVAAAATLVSLDQQLTIEALELKISSIPQHRFLDPKDVFSCYNLIQRLQAENNTRRDSNVLHTPTPSTIDMIESSLVTSSAAVTKRRRLSFNDDQSPEGKGLD 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60465g00029 327 SMART cyclin_7 82 168 IPR013763 -
Stsc60465g00029 327 ProSitePatterns Cyclins signature. 77 108 IPR006671 -
Stsc60465g00029 327 Gene3D - 71 175 - -
Stsc60465g00029 327 FunFam Cyclin-D5-1 72 175 - -
Stsc60465g00029 327 Pfam Cyclin, C-terminal domain 177 284 IPR004367 -
Stsc60465g00029 327 SUPERFAMILY Cyclin-like 46 174 IPR036915 -
Stsc60465g00029 327 SUPERFAMILY Cyclin-like 159 274 IPR036915 -
Stsc60465g00029 327 CDD CYCLIN_AtCycD-like_rpt2 177 269 - -
Stsc60465g00029 327 PANTHER CYCLINS 51 273 IPR039361 -
Stsc60465g00029 327 CDD CYCLIN_AtCycD-like_rpt1 77 172 - -
Stsc60465g00029 327 Gene3D - 176 241 - -
Stsc60465g00029 327 Pfam Cyclin, N-terminal domain 76 175 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60465g00029 Stsc-Chr60465 117714 119074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60465g00029 76 277 Core Cell Cycle Gene Families AT1G70210 39.336 1.11e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60465g00029 K18811 - gmx:100798728 374.015