Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60465g00028 ATGGAAACGGATATTCCGCTGCCCAATTACACTTACATGGGCAGGACTCTCCCTCAACTCCCCCTTGCCGATCATTCCTCTTCCGCCTTCAGCGACTGCAACAGCGACATATCCGGCGAATTCACCACCACTTCCTCCCAAGCACGCCGCCTCCTTATTGCCTGCGCCGCCGACAACTCCGACGAACTCATCTCCCACCTCGTCACCGAACTCCAATCCTCTTCCATCGAAGACCAAAAACAAGCCGCCATGGAGATCAGACTTCTCGCCAAGAACAAGCCCGAGAACCGCCTCAAGATCGCCAAAGCCGGCGCCATCAAACCTTTAATCTCCCTCATTTCATCACAGGACCTTCAGCTTCAGGAATACGGCGTCACCGCCATTCTCAACCTCTCCCTCTGCGACGAAAACAAAGACGCCATCGCTTCTTCCGGCGCGATTAAGCCTCTTGTTCGTGCACTCAAGACGGGAACTCCGGCAGCCAAAGAGAACGCTGCCTGCGCTCTCCTCCGTCTCTCTCAGCTGGAAGACAACAAGGTCGCGATAGGGAGGTGCGGCGCGATTCCACCGCTTGTGAGCCTTCTAGAAAGCGGTGGATTACGAGCGAAGAAAGACGCGTCGACGGCGCTGTACTCGCTGTGCTTGACGGTGAAGGAGAACAAGATCAGGGCGGTGAGGACGGGGATCATGAAGGTGCTGGTGGAGCTCATGGCAGATTTTGGGGGGAATATGATGGATAAGTCGGCGTACGTGGCGAGCGTTCTGGTGTCGGTGACAGAGGCGAGGGCGGCGCTGGTAGATGAAGGAGGGATACCGGTGTTGGTGGAGATGGTGGAGGTTGGGACGCAGAGGCAGAAGGAGATCGCGGTGGTTATTCTGTTGCAGGTCTGCGAGGAGAGCGTGGCTTACCGTAAGATGGTGGCGCGCGAAGGTGCGATTCCTCCTCTCGTTGCTCTGTCTCAGAACGGCACCAACCGCGCCAAGCAAAAGGCGGAGACACTGATAGAACTTCTACGGCAACCAAGATCCGGCAACGCCGCTGTATATGCTCCTCCTACATCATAA 1065 0.5662 METDIPLPNYTYMGRTLPQLPLADHSSSAFSDCNSDISGEFTTTSSQARRLLIACAADNSDELISHLVTELQSSSIEDQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLISLISSQDLQLQEYGVTAILNLSLCDENKDAIASSGAIKPLVRALKTGTPAAKENAACALLRLSQLEDNKVAIGRCGAIPPLVSLLESGGLRAKKDASTALYSLCLTVKENKIRAVRTGIMKVLVELMADFGGNMMDKSAYVASVLVSVTEARAALVDEGGIPVLVEMVEVGTQRQKEIAVVILLQVCEESVAYRKMVAREGAIPPLVALSQNGTNRAKQKAETLIELLRQPRSGNAAVYAPPTS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60465g00028 354 Gene3D - 43 177 IPR011989 -
Stsc60465g00028 354 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
Stsc60465g00028 354 Pfam Armadillo/beta-catenin-like repeat 177 214 IPR000225 GO:0005515
Stsc60465g00028 354 Pfam Armadillo/beta-catenin-like repeat 135 173 IPR000225 GO:0005515
Stsc60465g00028 354 FunFam RING-type E3 ubiquitin transferase 53 344 - -
Stsc60465g00028 354 Gene3D - 178 243 IPR011989 -
Stsc60465g00028 354 PANTHER U BOX DOMAIN-CONTAINING 63 339 - -
Stsc60465g00028 354 SMART arm_5 134 174 IPR000225 GO:0005515
Stsc60465g00028 354 SMART arm_5 257 298 IPR000225 GO:0005515
Stsc60465g00028 354 SMART arm_5 93 133 IPR000225 GO:0005515
Stsc60465g00028 354 SMART arm_5 175 215 IPR000225 GO:0005515
Stsc60465g00028 354 SMART arm_5 300 340 IPR000225 GO:0005515
Stsc60465g00028 354 SUPERFAMILY ARM repeat 60 338 IPR016024 -
Stsc60465g00028 354 Gene3D - 244 346 IPR011989 -
Stsc60465g00028 354 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60465g00028 Stsc-Chr60465 103199 105747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60465g00028 64 347 U-box Gene Family AT2G23140 49.296 2.48e-81 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60465g00028 - - gmx:100797550 520.39