Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60465g00027 ATGGAATCTGTTGATGTTGGAGCCTTCCCTGAAGGAGAATGGGATTGCTTTTACCCAATATTTTCAATTGAAGAAGACAGGAACACAGAGATTGAATCAATGTTTTGTCCCACTCCTAATAATTTGCAGTATATTTGTCAAGAGAGTAGTGATAGTAGTAGCTATACTGTGTTTATGGCCAATGATCCTGAATATTGTGTGCTACCAAATGATAATGATTTTAACTTTCACATGATGATGATGATGATGAATAGTGAGAAAAACCTTGTTCCTTCTTCACATGTCATGGTGAATGAAGATGATGAGACAAGTGATCCATCACAGAATTCTGATCTCCTCAAAAGAAATCCTGAATTGCAACTGCCAGATAAGAAGAAAAAGGCTCGTGTTTCAAATGATAGTTTGGAAATTCATCAGAGGAAGAACAATGCAGTAGGGAAAGGGAACAAGAAGAAGCAGAAGGTGGAGGGTAATGGGAAAGAAGTAGAAGAGAGTAATAATGCAGAATCAGATGGACTTGGCACTACTTACAATTATACTTCAGAAGATGATAATGACACTAATAATAATGAGAATAGTGGAGGAGCTACTTCATCAGCATCAGAATCAAATGGGAAGAGAAGAGCTAAGAGAGGATCAACAACAGATCCTCAGAGCCTTTATGCAAGGAGGAGAAGAGAGAGGATAAATGAGAGACTAAGAACTCTACAGAGTCTTGTTCCCAATGGAACAAAGGTTGATATAAGCACAATGCTAGAGGAGGCAGTCCACTACGTGAAATTTTTGCAGTTACAGATCAAGCTTTTGAGCTCTGATGAGATGTGGATGTACGCTCCCATAGCTTATAATGGATTTGACATTGGACTCAATTTATCTCCTCAACAACATTAA 891 0.3816 MESVDVGAFPEGEWDCFYPIFSIEEDRNTEIESMFCPTPNNLQYICQESSDSSSYTVFMANDPEYCVLPNDNDFNFHMMMMMMNSEKNLVPSSHVMVNEDDETSDPSQNSDLLKRNPELQLPDKKKKARVSNDSLEIHQRKNNAVGKGNKKKQKVEGNGKEVEESNNAESDGLGTTYNYTSEDDNDTNNNENSGGATSSASESNGKRRAKRGSTTDPQSLYARRRRERINERLRTLQSLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMYAPIAYNGFDIGLNLSPQQH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60465g00027 296 MobiDBLite consensus disorder prediction 97 225 - -
Stsc60465g00027 296 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 96 285 - -
Stsc60465g00027 296 MobiDBLite consensus disorder prediction 168 203 - -
Stsc60465g00027 296 Pfam Helix-loop-helix DNA-binding domain 223 263 IPR011598 GO:0046983
Stsc60465g00027 296 MobiDBLite consensus disorder prediction 149 167 - -
Stsc60465g00027 296 SMART finulus 219 268 IPR011598 GO:0046983
Stsc60465g00027 296 MobiDBLite consensus disorder prediction 117 136 - -
Stsc60465g00027 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 262 IPR011598 GO:0046983
Stsc60465g00027 296 FunFam Basic helix-loop-helix transcription factor 214 271 - -
Stsc60465g00027 296 Gene3D - 207 270 IPR036638 GO:0046983
Stsc60465g00027 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 212 279 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60465g00027 Stsc-Chr60465 100482 101832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60465g00027 85 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 48.472 6.82e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60465g00027 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60465g00027 - - aip:107607960 315.079