Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60464g00020 ATGGGGATTCACAAAGTGAGGAAGAAGAGAGAGTGTGCTCATGGTTATACACTTTGGCTCACTCTCATAAATACATTGCCTTCGAGTACGTTGCTTCCACAGAAAGAGGCAAGTCTAAGTTTCAGTGAAGCAGAGAGGAGGCTAAAGGAAAATGGACCAAATTTTCCACTTGAGTATTCTTTTCCAAGGTGGTGGCATCTTTTGTGGAACTCTCTCTTCAATCCTTTTAACATGATCCTCATTGTTTTATCTGCAATGTCATTCATTGCTTGTGACAATCCAAATGGATGCATCATGCTCATATTGGTTTTCATCAGTGTTGCCCTCCGTTTCTGTCAGGAATACAACAGCTCAAAAGCGGCCATGAAACTTTCTGAATTGGTAAGGTGCCCAGTAAAAGTGCAAAGATGTGCGGGTAGAGTTGTGCAGACAGAGTTAATAGTTCAAGTTGATCAGAGGGATATAGTTCCTGGTGACATTGTTATTTTTGAACCTGGAGATCTCTTTCCTGGAGATGTTAGGCTGTTATCTTCAAAGCATCTTGTTGTGAGCCAGGCCTCACTTACTGGGGAATCTTGGACAACTGAGAAAACTGCTGATATCACAGAAGATCAAACCACTCCTTTACTAGATTTAAAGAACATCTGCTTCGCCGGCACAAGTGTGGTTTCAGGTAGTGGAACAGGATTGGTTGTATCTACAGGATCCAATACTTACATGAGCAGCATGTTTTCAAAATTTGGGAAGAGAAAGTCACCGGATGAGTTTGAAAAGGGTCTCAAGTGGATATTTTACTTGCTTATCTCAGTTATGGTAGTGGTAGTTACAATTATGTTCTTGACAGATTACATTACATCAATGAATTTGAGCAACAGCATTCTTTTTGCAATCTCAGTTGCATCTGCCCTCAATCCTCAGATGCTTCCCCTCATTGTCAACACATGTCTAGCCAAAGGAGCGCTTGCCATGGCCAAAGACAGGTGTATAGTCAAAAGTTTGACCGCGATTCGCGACATGGGATCCATGGACATTCTATGTATTGACAAGACAGGCACACTAACAATGAATCGTGCAATTATGGTTAATCATGTTGATGCCAAAGGGATGCCCCAAGAACAAGTTCTACGCTTTGCGTTTCTCAATTCTTACTTTAAGATTGAGCAGAAGTATCCCTTGGATGATGCAATTCTTGCATATGTATATACAAATGGATTCAAGTTTCAGCCATCCAAGTGGAGCAAGCTAGATGAGATTCCTTTCGACTTCATAAGAAGAAGAGTATCTGTTATCTTAGAAACAAATGACAGAAACTCACAGTTCTCTGGCAGGTTCATGGTAACAAAAGGAGCAATATTGGAAGTCATGCGAGTTTGTTCTTACATTGCGAATTTTGACAAAGAAGAAGGAATCTCAATCTTCTCTTCAGATGACTATAAGAGAATTTTAAATCTTTCAGAAGAACTGAGCAATGAAGGATTAAGGGTTATTGCAGTAGCTATGAGGAAACTTGAAGAGGAAGAAAGTAATGGCATAAAGAGAAGTGATGAAGGAGACATGATATTCCTTGGCCTAATAACATTTTTTGACCCACCAAAGGACTCAGCAAAGGAAGCTTTGTGGCGTTTGGCAGAAAAAGGAGTGAAGGCAAAGGTTTTAACAGGTGATTCACTCTCATTGGCAACAAGGGTATGCACTGAAGTTGGCATAAGAACCAGTCATGTCATAACAGGGCCAGAGCTAGAGCAACTTGACCAAGAAGCTTTCCATGAGATGGTTCAGCACGCAACGGTGCTAGCACGGCTCACGCCAACTCAGAAACTGAGAGTGGTTCAGTCCTTGCAGACAATTGGAAACCATGTGGTTGGATTCTTGGGAGACGGTGTGAATGACTCTCTAGCCCTTGATGCTGCCAATGTTAGCATTTCAGTGGACTCAGGTGTAGCCATAGCCAAAGACATGGCAGATATCATATTACTTGAGAAAGATCTCAATGTGCTGGTTGCAGGAGTGGAGCATGGTAGACTCACCTTTGGCAACACAATGAAGTATGTGAAGATGTCAGTTATTGCAAACTTGGGAGGTGTGATTTCACTCCTCATAGCAATCTTGTTCCTCAAGTATGAGCCCTTAACCTCTAGACAGCTCCTCACACAGAACTTGCTGTACAGCGTGGGACAAATCGCGATCCCTTGGGACAAAATGGATGAAGAGTATGTGAAGAGTCCTCAGAAATGGTCAGAGAAAGGGTTGCCAATGTTCATATTGTGGAATGGACCAGTTTGCACACTGTGTGATGTGGCAACACTCTTGTTCCTTTGGTTCTATTACAATGTAGGAACTGATTTGGATGAGAAGTTCTTCCATTCAGCGTGGTTCATTGAGGGTCTACTCATGCAGACTCTGATCATTCACTTAATCAGAACTGAGAAAATTCCTTTGATACAGGACGTTGCTTCTTGGCCTGTGATGTGCTCCACACTTGTCATATCTGCAATTGGAATTGGACTTCCATTCACACCTATTGGGAGATTCATGCAATTCACGCTTCTACCTCTCTCCTATTTTGGATTTTTGCTCATTCTTTTTCTTGGATACTTTGTAGTTGGCCAGGTCGTTAAGAGACTTTACATATTAGTTTATAAGAGATGGCTTTGA 2655 0.4181 MGIHKVRKKRECAHGYTLWLTLINTLPSSTLLPQKEASLSFSEAERRLKENGPNFPLEYSFPRWWHLLWNSLFNPFNMILIVLSAMSFIACDNPNGCIMLILVFISVALRFCQEYNSSKAAMKLSELVRCPVKVQRCAGRVVQTELIVQVDQRDIVPGDIVIFEPGDLFPGDVRLLSSKHLVVSQASLTGESWTTEKTADITEDQTTPLLDLKNICFAGTSVVSGSGTGLVVSTGSNTYMSSMFSKFGKRKSPDEFEKGLKWIFYLLISVMVVVVTIMFLTDYITSMNLSNSILFAISVASALNPQMLPLIVNTCLAKGALAMAKDRCIVKSLTAIRDMGSMDILCIDKTGTLTMNRAIMVNHVDAKGMPQEQVLRFAFLNSYFKIEQKYPLDDAILAYVYTNGFKFQPSKWSKLDEIPFDFIRRRVSVILETNDRNSQFSGRFMVTKGAILEVMRVCSYIANFDKEEGISIFSSDDYKRILNLSEELSNEGLRVIAVAMRKLEEEESNGIKRSDEGDMIFLGLITFFDPPKDSAKEALWRLAEKGVKAKVLTGDSLSLATRVCTEVGIRTSHVITGPELEQLDQEAFHEMVQHATVLARLTPTQKLRVVQSLQTIGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGGVISLLIAILFLKYEPLTSRQLLTQNLLYSVGQIAIPWDKMDEEYVKSPQKWSEKGLPMFILWNGPVCTLCDVATLLFLWFYYNVGTDLDEKFFHSAWFIEGLLMQTLIIHLIRTEKIPLIQDVASWPVMCSTLVISAIGIGLPFTPIGRFMQFTLLPLSYFGFLLILFLGYFVVGQVVKRLYILVYKRWL 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60464g00020 884 Gene3D - 130 234 - -
Stsc60464g00020 884 Pfam Cation transporter/ATPase, N-terminus 39 87 IPR004014 -
Stsc60464g00020 884 NCBIfam magnesium-translocating P-type ATPase 34 883 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc60464g00020 884 Pfam E1-E2 ATPase 140 325 - -
Stsc60464g00020 884 SFLD C1.7: P-type atpase like 328 674 - -
Stsc60464g00020 884 Gene3D - 358 528 IPR023299 GO:0000166
Stsc60464g00020 884 SUPERFAMILY Calcium ATPase, transmembrane domain M 39 881 IPR023298 -
Stsc60464g00020 884 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 534 IPR023299 GO:0000166
Stsc60464g00020 884 PRINTS Magnesium-transporting ATPase signature 700 711 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc60464g00020 884 PRINTS Magnesium-transporting ATPase signature 259 275 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc60464g00020 884 PRINTS Magnesium-transporting ATPase signature 837 858 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc60464g00020 884 PRINTS Magnesium-transporting ATPase signature 732 745 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc60464g00020 884 PRINTS Magnesium-transporting ATPase signature 380 393 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc60464g00020 884 PRINTS Magnesium-transporting ATPase signature 682 697 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc60464g00020 884 PRINTS Magnesium-transporting ATPase signature 752 768 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc60464g00020 884 PRINTS Magnesium-transporting ATPase signature 787 808 IPR006415 GO:0015444|GO:0015693|GO:0016020
Stsc60464g00020 884 PANTHER CATION TRANSPORTING ATPASE 39 875 - -
Stsc60464g00020 884 Gene3D - 343 661 IPR023214 -
Stsc60464g00020 884 Pfam haloacid dehalogenase-like hydrolase 342 638 - -
Stsc60464g00020 884 NCBIfam HAD-IC family P-type ATPase 593 704 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60464g00020 884 NCBIfam HAD-IC family P-type ATPase 99 394 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60464g00020 884 SUPERFAMILY Calcium ATPase, transduction domain A 140 244 IPR008250 -
Stsc60464g00020 884 ProSitePatterns E1-E2 ATPases phosphorylation site. 348 354 IPR018303 -
Stsc60464g00020 884 Gene3D - 96 832 - -
Stsc60464g00020 884 SFLD p-type atpase 328 674 IPR044492 -
Stsc60464g00020 884 SUPERFAMILY HAD-like 518 672 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60464g00020 Stsc-Chr60464 117456 120483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60464g00020 39 779 Primary Pumps ATPases(2) AT1G10130 27.143 3.83e-63 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60464g00020 K01531 - gmx:100795153 1375.92