Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60464g00019 ATGGCTTTTCTTCCCAGAAAACTACTACCACTGCAACACCACAATGAACATATGATTACCAATAGCCCAGGCCCAGGCCCAGGCCCAGGCCCAGCACCTTCTCCTTCCCTTATTCAACCATCACTCTCACTCCCTATTACACCCAAGTTGCCTTTCCCTTTAATCCCTATCCGTGATGAAGGCTTTCATATGAATGTTCTTCGACTTGGCATGATTCTCATTGCCAGCACCCTTGGAATCATGATGCTTCTCTGTACAGTTTCCCTAATCCGAAGGAGCTGCTGTTCCCGAAGGAGACGAAACGCGCCCATATTGTTCCATGTTAATGGAGATTCTGGTGTTTTAGGTTCGGATTTCGATGACGATGAGGGACCCTTGGTTCATCACCCTGTATGGTTCATCCGTACGGTGGGTCTGCAGCAGTCGGTTATAGATTCCATCACGGTGTTTGTTTACAGAAAAGGCGAGAGGCTAATTGATGGTACAGAGTGCTCTGTTTGCCTTGGCGAGTTTCAAGAAAACGACACTCTGAGGCTGTTACCGAAGTGCAGTCACGCCTTTCACGTCCCTTGCATTGACACGTGGCTTAGATCGCACCAGAATTGCCCTCTCTGCCGTGCACCCGTTCTTAGTGATTCCAGTGCCGCTGCCCCTGCTGCTGCTGGAACTGAGATGATAGTTACCGAGGCGGATTCAACTGGTTCTGGTGAGAATCAAGAGATGGAGAATTTGGATTATGGCGAGAGCAGTTCAGTGAGGATTACTGGAGATGAGGATGGAGAAGCCATAGAAAAGATGAATATGCAAAGGGATGCGGTGAGGAGGTCAGTTTCCATGGATTCATCATCCATGATTTGTGATTTGGATTCAAGTAAGGGTAGTGGTGGAAGTTCAAGTTCAAGAATATACAAACTGGCTTCAATAGCATTTCAGAAGAGGCCTAGGAAATGCTCCTCTTCCACACACACTAGGAGCCGCAGTTCAAGTCTTCCTTTGTAG 999 0.4785 MAFLPRKLLPLQHHNEHMITNSPGPGPGPGPAPSPSLIQPSLSLPITPKLPFPLIPIRDEGFHMNVLRLGMILIASTLGIMMLLCTVSLIRRSCCSRRRRNAPILFHVNGDSGVLGSDFDDDEGPLVHHPVWFIRTVGLQQSVIDSITVFVYRKGERLIDGTECSVCLGEFQENDTLRLLPKCSHAFHVPCIDTWLRSHQNCPLCRAPVLSDSSAAAPAAAGTEMIVTEADSTGSGENQEMENLDYGESSSVRITGDEDGEAIEKMNMQRDAVRRSVSMDSSSMICDLDSSKGSGGSSSSRIYKLASIAFQKRPRKCSSSTHTRSRSSSLPL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60464g00019 332 MobiDBLite consensus disorder prediction 16 38 - -
Stsc60464g00019 332 SUPERFAMILY RING/U-box 152 212 - -
Stsc60464g00019 332 Pfam Ring finger domain 163 206 IPR001841 -
Stsc60464g00019 332 CDD RING-H2_EL5-like 163 206 - -
Stsc60464g00019 332 FunFam RING-H2 finger protein ATL54 139 212 - -
Stsc60464g00019 332 SMART ring_2 164 205 IPR001841 -
Stsc60464g00019 332 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Stsc60464g00019 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 214 IPR013083 -
Stsc60464g00019 332 SMART FANCL_C_2 160 213 - -
Stsc60464g00019 332 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 70 213 IPR044675 -
Stsc60464g00019 332 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60464g00019 Stsc-Chr60464 115307 116891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60464g00019 114 270 C3H Transcription Factor Family AT1G72220 44.444 4.03e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60464g00019 - - adu:107481823 405.216