Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60464g00019 | ATGGCTTTTCTTCCCAGAAAACTACTACCACTGCAACACCACAATGAACATATGATTACCAATAGCCCAGGCCCAGGCCCAGGCCCAGGCCCAGCACCTTCTCCTTCCCTTATTCAACCATCACTCTCACTCCCTATTACACCCAAGTTGCCTTTCCCTTTAATCCCTATCCGTGATGAAGGCTTTCATATGAATGTTCTTCGACTTGGCATGATTCTCATTGCCAGCACCCTTGGAATCATGATGCTTCTCTGTACAGTTTCCCTAATCCGAAGGAGCTGCTGTTCCCGAAGGAGACGAAACGCGCCCATATTGTTCCATGTTAATGGAGATTCTGGTGTTTTAGGTTCGGATTTCGATGACGATGAGGGACCCTTGGTTCATCACCCTGTATGGTTCATCCGTACGGTGGGTCTGCAGCAGTCGGTTATAGATTCCATCACGGTGTTTGTTTACAGAAAAGGCGAGAGGCTAATTGATGGTACAGAGTGCTCTGTTTGCCTTGGCGAGTTTCAAGAAAACGACACTCTGAGGCTGTTACCGAAGTGCAGTCACGCCTTTCACGTCCCTTGCATTGACACGTGGCTTAGATCGCACCAGAATTGCCCTCTCTGCCGTGCACCCGTTCTTAGTGATTCCAGTGCCGCTGCCCCTGCTGCTGCTGGAACTGAGATGATAGTTACCGAGGCGGATTCAACTGGTTCTGGTGAGAATCAAGAGATGGAGAATTTGGATTATGGCGAGAGCAGTTCAGTGAGGATTACTGGAGATGAGGATGGAGAAGCCATAGAAAAGATGAATATGCAAAGGGATGCGGTGAGGAGGTCAGTTTCCATGGATTCATCATCCATGATTTGTGATTTGGATTCAAGTAAGGGTAGTGGTGGAAGTTCAAGTTCAAGAATATACAAACTGGCTTCAATAGCATTTCAGAAGAGGCCTAGGAAATGCTCCTCTTCCACACACACTAGGAGCCGCAGTTCAAGTCTTCCTTTGTAG | 999 | 0.4785 | MAFLPRKLLPLQHHNEHMITNSPGPGPGPGPAPSPSLIQPSLSLPITPKLPFPLIPIRDEGFHMNVLRLGMILIASTLGIMMLLCTVSLIRRSCCSRRRRNAPILFHVNGDSGVLGSDFDDDEGPLVHHPVWFIRTVGLQQSVIDSITVFVYRKGERLIDGTECSVCLGEFQENDTLRLLPKCSHAFHVPCIDTWLRSHQNCPLCRAPVLSDSSAAAPAAAGTEMIVTEADSTGSGENQEMENLDYGESSSVRITGDEDGEAIEKMNMQRDAVRRSVSMDSSSMICDLDSSKGSGGSSSSRIYKLASIAFQKRPRKCSSSTHTRSRSSSLPL | 332 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60464g00019 | 332 | MobiDBLite | consensus disorder prediction | 16 | 38 | - | - | |
Stsc60464g00019 | 332 | SUPERFAMILY | RING/U-box | 152 | 212 | - | - | |
Stsc60464g00019 | 332 | Pfam | Ring finger domain | 163 | 206 | IPR001841 | - | |
Stsc60464g00019 | 332 | CDD | RING-H2_EL5-like | 163 | 206 | - | - | |
Stsc60464g00019 | 332 | FunFam | RING-H2 finger protein ATL54 | 139 | 212 | - | - | |
Stsc60464g00019 | 332 | SMART | ring_2 | 164 | 205 | IPR001841 | - | |
Stsc60464g00019 | 332 | ProSiteProfiles | Zinc finger RING-type profile. | 164 | 206 | IPR001841 | - | |
Stsc60464g00019 | 332 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 214 | IPR013083 | - | |
Stsc60464g00019 | 332 | SMART | FANCL_C_2 | 160 | 213 | - | - | |
Stsc60464g00019 | 332 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 70 | 213 | IPR044675 | - | |
Stsc60464g00019 | 332 | MobiDBLite | consensus disorder prediction | 24 | 38 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60464g00019 | Stsc-Chr60464 | 115307 | 116891 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60464g00019 | 114 | 270 | C3H Transcription Factor Family | AT1G72220 | 44.444 | 4.03e-40 | 144 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60464g00019 | - | - | adu:107481823 | 405.216 |