Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60464g00018 ATGAAGAGACTTAGTAGCTCGGACGATTCTTTGGGCGCTCTCATGACAATTTGTCCATCATCAACAACAGAAGAACACAGTCCTAGGAACAAACAGCAGGTGTACGGAAGGGAGTTCCAAACGATGTTGGATGGACTGGACGAGGAAGGTTGCATCGAAGAATCGGGGCACCACGGCGAGAAGAAGCGCCGCTTAAGCGTGGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAAGTTGAGAACAAGCTGGAACCAGACAGGAAGGTGAAGTTGGCACAAGAACTGGGCCTGCAGCCAAGACAAGTTGCCGTGTGGTTCCAAAACCGCAGAGCCAGGTGGAAAACCAAGCAGTTAGAAAGAGACTACGGCGTTCTCAAAGCCAATTACGAAGCTCTTAAACTCAACTTCGAAAAACTCCAACAAGACAACCAAGCCTTGCATAAAGAGATTAAGGGATTGAAATCAAGGATGCAAGAGGAACGCAGCGAAAGCGATGCTTCCGTGAAGAAGGAAGAAGTAGAGATGATAACAACGCTGCAGGAGTCGGAGGAGAATATCAAGTGTAATAACCCTTGTTCTGTTGAAACCGCTGGCGCCATTGCTGGATCCGATGGTGAGGGTGTGGGAGGAGGAGTAGCAGCATCGATATCGCTGTTCCCTTGCGGTGGAGACTTGAAAGACGGATCTTCAGATAGCGATTCAAGCGCGATCTTGAACGAAGAGAATAACAACAGCAGCTGTAGCCCCATGATGAGTGGGGTTCTGCAAAGCTCGAACCTTTTGATGTGTGAGCACGATGAGTCGCCGTCATCCATGAGCTGCTTGCAGTTCCAGAAGGCGTACCAGGCCACAACTACACAGTACGTGAAGATGGAGGAGCACAACTTCTTCAGTGCAGACGAGGCCTGCAATTTCTTCTCGGATGAGCAAGCACCAACCCTTCAGTGGTACTGTTCGGAAGAGTGGAGTTGA 972 0.4959 MKRLSSSDDSLGALMTICPSSTTEEHSPRNKQQVYGREFQTMLDGLDEEGCIEESGHHGEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNFEKLQQDNQALHKEIKGLKSRMQEERSESDASVKKEEVEMITTLQESEENIKCNNPCSVETAGAIAGSDGEGVGGGVAASISLFPCGGDLKDGSSDSDSSAILNEENNNSSCSPMMSGVLQSSNLLMCEHDESPSSMSCLQFQKAYQATTTQYVKMEEHNFFSADEACNFFSDEQAPTLQWYCSEEWS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60464g00018 323 Pfam Homeobox associated leucine zipper 116 158 IPR003106 GO:0006355|GO:0043565
Stsc60464g00018 323 Gene3D - 55 123 - -
Stsc60464g00018 323 SUPERFAMILY Homeodomain-like 48 118 IPR009057 -
Stsc60464g00018 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 317 IPR045224 GO:0003700
Stsc60464g00018 323 MobiDBLite consensus disorder prediction 1 33 - -
Stsc60464g00018 323 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Stsc60464g00018 323 CDD homeodomain 61 117 IPR001356 GO:0003677
Stsc60464g00018 323 SMART HOX_1 59 120 IPR001356 GO:0003677
Stsc60464g00018 323 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Stsc60464g00018 323 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Stsc60464g00018 323 MobiDBLite consensus disorder prediction 9 33 - -
Stsc60464g00018 323 FunFam Homeobox-leucine zipper protein HAT5 54 118 - -
Stsc60464g00018 323 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Stsc60464g00018 323 Coils Coil 115 163 - -
Stsc60464g00018 323 Pfam Homeodomain 61 114 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60464g00018 Stsc-Chr60464 106903 109538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60464g00018 1 323 Homeobox Transcription Factor Family AT4G40060 44.179 3.48e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc60464g00018 Homeodomain 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60464g00018 K09338 - gmx:100796213 394.43