Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60464g00009 | ATGGAGGAAGAAGAGCACGAGGTGTACGGAGGAGAGATCCCAGACGTTGCAGAGATGGAAGCTGACGTCGACATGTCCGCTCCCGACGACGACCCCGCCGTCAAGGAGCTCGACGAAATGAAGCGCCGCCTTAAGGAGATGGAAGAAGAAGCTGCGGCTCTTCGCGAGATGCAAGCTAAGGTCGAAAAGGAGATTGGCTCTGCTCAAGATCCTGCCACTGCAGCCGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTCGATCTGTATTTGTAGGCAATGTTGATTATGCATGCACACCAGAGGAGGTGCAGCAACACTTTCAATCATGTGGTACAGTGAACAGGGTAACCATCCTGACTGACAAGTTCGGCCACCCTAAAGGTTTTGCTTATGTGGAGTTTGTTGAAGTTGAAGCTGTTCAAGAAGCTCTTGTCTTGAATGAATCGGAGTTACATGGGCGTCAATTGAAGGTCTTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAGTATCGTCCTAGGCGCTATAATCCTTACAGGTCATATGGCTTTAGGAGGCCATATGCTCCTCCTTACTTTTACTCTCCTTATGGATATGGGAAAGTTCCTAGATTTAGAAGGTCAACTCGTTACATGCCATACTACTAG | 648 | 0.4877 | MEEEEHEVYGGEIPDVAEMEADVDMSAPDDDPAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGSAQDPATAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYRSYGFRRPYAPPYFYSPYGYGKVPRFRRSTRYMPYY | 215 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60464g00009 | 215 | FunFam | Polyadenylate-binding protein 1 | 25 | 159 | - | - | |
Stsc60464g00009 | 215 | CDD | RRM_II_PABPs | 88 | 159 | - | - | |
Stsc60464g00009 | 215 | MobiDBLite | consensus disorder prediction | 63 | 84 | - | - | |
Stsc60464g00009 | 215 | Coils | Coil | 30 | 64 | - | - | |
Stsc60464g00009 | 215 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 4 | 189 | - | - | |
Stsc60464g00009 | 215 | SUPERFAMILY | RNA-binding domain, RBD | 77 | 185 | IPR035979 | GO:0003676 | |
Stsc60464g00009 | 215 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 87 | 163 | IPR000504 | GO:0003723 | |
Stsc60464g00009 | 215 | Gene3D | - | 29 | 159 | IPR012677 | - | |
Stsc60464g00009 | 215 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 89 | 157 | IPR000504 | GO:0003723 | |
Stsc60464g00009 | 215 | SMART | rrm1_1 | 88 | 159 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60464g00009 | Stsc-Chr60464 | 30354 | 34245 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60464g00009 | 84 | 158 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 34.211 | 5.06e-09 | 53.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60464g00009 | K14396 | - | gmx:100789721 | 349.747 |