Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60464g00005 ATGGCAATGGCAATTACCACTTTTGGTAGTACATCGGCTACACAATGGGGAATTCGTCCTCAGCTTTTACTAAGATCCAGTATGATAGCCAAGGTTGCATCATCCAGCCACAATTTTACAAGCAGGGTATGCTTTATGGCTGCCCCTACTTCAAGCTTTCTTTCTCAGGATTCGTTGCGCATGCTATTTAATGCGGGTTCATTTCAGCCTTTACATCACTGTAGGGGATCAAGGTTGATAGTTAGGGCAGAATCAGATTTCTATTCAGTCCTCGGTGTTTCAAGAAACGCCAGTAAATCTGAAATAAAGAGTGCTTATAGGAAGCTTGCCCGGAATTATCATCCAGATGTGAACAAAGAAGCTGGAGCAGAAGATAAATTTAAGGAAATCAGCAATGCATATGAGGTCTTATCTGATGATGAGAAACGATCCATATATGACAGATATGGAGAGGCTGGACTTAAAGGATCTGGAATGGGCATGGGGGATTTCAGCAATCCCTTTGATTTGTTTGAGACATTGTTTGAGGGCATGAATCGTGGTGCCGGTTCCAGAGGTTCTTGGAATGGAGCAATAGATGGTGAAGATGAGTACTACAGCCTTGTTTTGAACTTTAAAGAAGCAGTTTTTGGTATAGAAAAAGAGATAGAGATAAGTCGATTAGAGAGCTGTGGAACTTGCAATGGTTCAGGTGCTAAACCAGGGACCACACCGACCAGATGCAGCACTTGTGGAGGTCAAGGCCGGGTTGTCTCGTCAACAAGAACTCCATTAGGTATCTTCCAGCAGTCTATGACCTGCTCATCTTGCAATGGGAGTGGAGAAATTTCAACACCTTGCAATACATGTTCTGGTGATGGTCGAGTAAGGAAAACAAAGCGGATAAGTCTGAAGGTCCCAGCAGGCGTGGACTCTGGTAGTCGTTTAAGGGTCCGTAATGAAGGTAATGCTGGAAGGCGAGGAGGTTCTCCCGGCGACCTCTTTGTTGTTATTGAGGTCATCCCAGATCCGGTCCTTAAACGAGACGACACCAACATTTTATACACCTGCAAGGTTTCTTACATTGATGCAATCTTGGGCACTACAACAAAGGTTCCTACTGTGGATGGAATGGTGGACTTGAAAATTCCAGCGGGGACACAACCAAACACAACACTTGTTATGGCGAAAAAAGGTGTTCCCTATCTGAATAAAAACAATATGAGGGGCGATCAATTGGTTCGCGTGCAAGTTGAAATCCCCAAAAGACTGAGCAGTGATGAGAGGAAACTTATTGAGGAGCTTTCTGATTTAAGCAAAGGCAAAACTGCTACCGGTAAGAGATGA 1326 0.4412 MAMAITTFGSTSATQWGIRPQLLLRSSMIAKVASSSHNFTSRVCFMAAPTSSFLSQDSLRMLFNAGSFQPLHHCRGSRLIVRAESDFYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEAGAEDKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGMGMGDFSNPFDLFETLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPTRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGSGEISTPCNTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGSPGDLFVVIEVIPDPVLKRDDTNILYTCKVSYIDAILGTTTKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPYLNKNNMRGDQLVRVQVEIPKRLSSDERKLIEELSDLSKGKTATGKR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60464g00005 441 FunFam Molecular chaperone DnaJ 216 292 - -
Stsc60464g00005 441 FunFam Chaperone protein dnaJ A6 chloroplastic 83 186 - -
Stsc60464g00005 441 CDD DnaJ_C 195 417 - -
Stsc60464g00005 441 ProSiteProfiles Zinc finger CR-type profile. 211 292 IPR001305 GO:0031072|GO:0051082
Stsc60464g00005 441 PRINTS DnaJ domain signature 88 106 IPR001623 -
Stsc60464g00005 441 PRINTS DnaJ domain signature 122 142 IPR001623 -
Stsc60464g00005 441 PRINTS DnaJ domain signature 142 161 IPR001623 -
Stsc60464g00005 441 PRINTS DnaJ domain signature 106 121 IPR001623 -
Stsc60464g00005 441 SMART dnaj_3 85 142 IPR001623 -
Stsc60464g00005 441 Pfam DnaJ central domain 224 287 IPR001305 GO:0031072|GO:0051082
Stsc60464g00005 441 FunFam Chaperone protein dnaJ 1, mitochondrial 334 441 - -
Stsc60464g00005 441 Pfam DnaJ C terminal domain 199 414 IPR002939 -
Stsc60464g00005 441 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 211 291 IPR036410 -
Stsc60464g00005 441 Pfam DnaJ domain 86 147 IPR001623 -
Stsc60464g00005 441 CDD DnaJ 86 139 IPR001623 -
Stsc60464g00005 441 Gene3D - 194 329 - -
Stsc60464g00005 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 346 IPR008971 GO:0006457|GO:0051082
Stsc60464g00005 441 CDD DnaJ_zf 224 287 IPR001305 GO:0031072|GO:0051082
Stsc60464g00005 441 Gene3D - 224 287 - -
Stsc60464g00005 441 Hamap Chaperone protein DnaJ [dnaJ]. 83 437 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Stsc60464g00005 441 ProSiteProfiles dnaJ domain profile. 86 150 IPR001623 -
Stsc60464g00005 441 FunFam Putative Mitochondrial DnaJ chaperone 280 329 - -
Stsc60464g00005 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 339 425 IPR008971 GO:0006457|GO:0051082
Stsc60464g00005 441 SUPERFAMILY Chaperone J-domain 83 179 IPR036869 -
Stsc60464g00005 441 Gene3D DnaJ domain 83 187 IPR036869 -
Stsc60464g00005 441 NCBIfam molecular chaperone DnaJ 86 430 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Stsc60464g00005 441 Gene3D - 334 440 - -
Stsc60464g00005 441 ProSitePatterns Nt-dnaJ domain signature. 127 146 IPR018253 -
Stsc60464g00005 441 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 42 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60464g00005 Stsc-Chr60464 10454 13893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60464g00005 87 149 C2H2 Transcription Factor Family AT1G74250 44.928 2.02e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60464g00005 K03686 - gmx:100811006 786.563