Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60463g00022 ATGGCGGATGTACCGACGAGTCCGGCGGCCGGGAGCCATGAGAGCGGTGGGGAGCAGAGCCCGCAGGGGTCTTCTTCCGGCGGCCTAGGGGCACGGGAGCAGGACAGGTTCCTTCCTATCGCCAACATCAGCAGGATCATGAAGAAGGGGCTCCCTGCCAATGGCAAGATCGCCAAGGACGCCAAGGACACAATGCAGGAATGCGTTTCGGAATTCATCAGCTTCATCACCAGCGAGGCATGTGAGAAGTGCCAGAAAGAGAAGAGGAAGACCATCAATGGAGATGATTTGCTATGGGCGATGGCCACTTTAGGATTTCAAGACTACATAGAACCTCTTAAAGTGTACCTAGCAAGATTCAGAGAGGGTGACACCAAAGGATCTGCTAGAACTGGTGATGGATCCGTTAGACGAGATCAAGTTGGTCTAGCTGGTCAAAATACTCAGCTTGTTCATCAGGGTTCGCTGAATTATATTAGTTCCCAGGTGCAGCAACAACACATGGTTATTCCTTCAATGCAAAGCCATGAATAA 534 0.5131 MADVPTSPAAGSHESGGEQSPQGSSSGGLGAREQDRFLPIANISRIMKKGLPANGKIAKDAKDTMQECVSEFISFITSEACEKCQKEKRKTINGDDLLWAMATLGFQDYIEPLKVYLARFREGDTKGSARTGDGSVRRDQVGLAGQNTQLVHQGSLNYISSQVQQQHMVIPSMQSHE 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60463g00022 177 MobiDBLite consensus disorder prediction 12 29 - -
Stsc60463g00022 177 Gene3D Histone, subunit A 29 167 IPR009072 GO:0046982
Stsc60463g00022 177 MobiDBLite consensus disorder prediction 1 31 - -
Stsc60463g00022 177 FunFam Nuclear factor Y, subunit B1 27 126 - -
Stsc60463g00022 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Stsc60463g00022 177 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc60463g00022 177 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Stsc60463g00022 177 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Stsc60463g00022 177 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Stsc60463g00022 177 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc60463g00022 177 SUPERFAMILY Histone-fold 34 130 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60463g00022 Stsc-Chr60463 109399 112864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60463g00022 11 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.732 2.32e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc60463g00022 CBFD_NFYB_HMF 1.5e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60463g00022 K08065 - gmx:100779577 271.937