Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60463g00016 | ATGGGTGTGAGCTTTGTCTCGACCCCAGTGACCCACAACCCACCACAACCTCACCCAAGACCCAATCACCACCACTGGCTACCCCCGAGCACTGTTCAGCTGTTCCTCCGCCTTCTCCCGTCGCCGAACATCGCCTTCTCCAGTCGCGAGCTTCTGTCTGTCACCGTCGCGAGAACTCGCTTGTCTCGGCCAAGGTGCCGCCTTCCATCGTCGGCTTCCAGACGCGAGGAGCAATATTCCGAATTCGAGACCTTTTACAACAGGGGAGGGGTAATGCCATATGAGCTACAGCTCGTCGACGGACAACACCCCCTCTTGATTCCTTTCAATTCTCCCATCAAAATCAAAATCATTATATTCACCGAATCTCACAGAGAAACTGAGAGAGAGAGAATGGAGCAGGAAGAACACGAAGTGTACGGTGCCGACATCCCCGACGAAGCTGACATGGACGCCGACGCCGACCTTCAGGAACACGATGACGACCATGACAACAACCACCATGCCTCCTCTCATGCTAACAAGCAAGACTTGGAGGACATGAAGAAGAGGCTGAAGGAGATTGAGGAAGAGGCTAACGCCCTACGCGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCTCTGTTCAAGATACGACTGGATCTTCTGCAAGTCAAGCTGAAAAGGAGGAAGTGGATTCTCGGTCAATCTATGTTGGTAATGTTGATTATGCATGCACACCTGAAGAGGTTCAACAACATTTTCAGTCATGTGGAACTGTGAACAGAGTTACAATATTGACAGACAAATTTGGGCAGCCAAAAGGGTTTGCTTATGTAGAGTTCGTTGAGATAGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTATCTGCTAAGCGTACAAATGTTCCTGGGATGAAACAGTATTTTGGAAGAAGACCTGGTTTCCGGTCTAGGAGGCCTTTCATGCCTGCTCCATTTTATCCAACATATGGTTATGGAAGGGTTCCAAGGTTTAGAAGACCTACACGTTACAGGCCATACTAG | 1056 | 0.4924 | MGVSFVSTPVTHNPPQPHPRPNHHHWLPPSTVQLFLRLLPSPNIAFSSRELLSVTVARTRLSRPRCRLPSSASRREEQYSEFETFYNRGGVMPYELQLVDGQHPLLIPFNSPIKIKIIIFTESHRETERERMEQEEHEVYGADIPDEADMDADADLQEHDDDHDNNHHASSHANKQDLEDMKKRLKEIEEEANALREMQAKVEKEMGSVQDTTGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPGFRSRRPFMPAPFYPTYGYGRVPRFRRPTRYRPY | 351 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60463g00016 | 351 | MobiDBLite | consensus disorder prediction | 203 | 225 | - | - | |
Stsc60463g00016 | 351 | MobiDBLite | consensus disorder prediction | 127 | 144 | - | - | |
Stsc60463g00016 | 351 | MobiDBLite | consensus disorder prediction | 206 | 220 | - | - | |
Stsc60463g00016 | 351 | FunFam | Polyadenylate-binding protein 1 | 222 | 308 | - | - | |
Stsc60463g00016 | 351 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 129 | 324 | - | - | |
Stsc60463g00016 | 351 | SMART | rrm1_1 | 229 | 300 | IPR000504 | GO:0003723 | |
Stsc60463g00016 | 351 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 228 | 304 | IPR000504 | GO:0003723 | |
Stsc60463g00016 | 351 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Stsc60463g00016 | 351 | Gene3D | - | 163 | 301 | IPR012677 | - | |
Stsc60463g00016 | 351 | Coils | Coil | 171 | 205 | - | - | |
Stsc60463g00016 | 351 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - | |
Stsc60463g00016 | 351 | MobiDBLite | consensus disorder prediction | 156 | 178 | - | - | |
Stsc60463g00016 | 351 | SUPERFAMILY | RNA-binding domain, RBD | 218 | 323 | IPR035979 | GO:0003676 | |
Stsc60463g00016 | 351 | MobiDBLite | consensus disorder prediction | 159 | 178 | - | - | |
Stsc60463g00016 | 351 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 230 | 298 | IPR000504 | GO:0003723 | |
Stsc60463g00016 | 351 | CDD | RRM_II_PABPs | 229 | 300 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60463g00016 | Stsc-Chr60463 | 76373 | 83469 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60463g00016 | 229 | 333 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 33.898 | 1.85e-09 | 57.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60463g00016 | K14396 | - | gmx:100527545 | 322.398 |