Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60463g00016 ATGGGTGTGAGCTTTGTCTCGACCCCAGTGACCCACAACCCACCACAACCTCACCCAAGACCCAATCACCACCACTGGCTACCCCCGAGCACTGTTCAGCTGTTCCTCCGCCTTCTCCCGTCGCCGAACATCGCCTTCTCCAGTCGCGAGCTTCTGTCTGTCACCGTCGCGAGAACTCGCTTGTCTCGGCCAAGGTGCCGCCTTCCATCGTCGGCTTCCAGACGCGAGGAGCAATATTCCGAATTCGAGACCTTTTACAACAGGGGAGGGGTAATGCCATATGAGCTACAGCTCGTCGACGGACAACACCCCCTCTTGATTCCTTTCAATTCTCCCATCAAAATCAAAATCATTATATTCACCGAATCTCACAGAGAAACTGAGAGAGAGAGAATGGAGCAGGAAGAACACGAAGTGTACGGTGCCGACATCCCCGACGAAGCTGACATGGACGCCGACGCCGACCTTCAGGAACACGATGACGACCATGACAACAACCACCATGCCTCCTCTCATGCTAACAAGCAAGACTTGGAGGACATGAAGAAGAGGCTGAAGGAGATTGAGGAAGAGGCTAACGCCCTACGCGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCTCTGTTCAAGATACGACTGGATCTTCTGCAAGTCAAGCTGAAAAGGAGGAAGTGGATTCTCGGTCAATCTATGTTGGTAATGTTGATTATGCATGCACACCTGAAGAGGTTCAACAACATTTTCAGTCATGTGGAACTGTGAACAGAGTTACAATATTGACAGACAAATTTGGGCAGCCAAAAGGGTTTGCTTATGTAGAGTTCGTTGAGATAGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTATCTGCTAAGCGTACAAATGTTCCTGGGATGAAACAGTATTTTGGAAGAAGACCTGGTTTCCGGTCTAGGAGGCCTTTCATGCCTGCTCCATTTTATCCAACATATGGTTATGGAAGGGTTCCAAGGTTTAGAAGACCTACACGTTACAGGCCATACTAG 1056 0.4924 MGVSFVSTPVTHNPPQPHPRPNHHHWLPPSTVQLFLRLLPSPNIAFSSRELLSVTVARTRLSRPRCRLPSSASRREEQYSEFETFYNRGGVMPYELQLVDGQHPLLIPFNSPIKIKIIIFTESHRETERERMEQEEHEVYGADIPDEADMDADADLQEHDDDHDNNHHASSHANKQDLEDMKKRLKEIEEEANALREMQAKVEKEMGSVQDTTGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPGFRSRRPFMPAPFYPTYGYGRVPRFRRPTRYRPY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60463g00016 351 MobiDBLite consensus disorder prediction 203 225 - -
Stsc60463g00016 351 MobiDBLite consensus disorder prediction 127 144 - -
Stsc60463g00016 351 MobiDBLite consensus disorder prediction 206 220 - -
Stsc60463g00016 351 FunFam Polyadenylate-binding protein 1 222 308 - -
Stsc60463g00016 351 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 129 324 - -
Stsc60463g00016 351 SMART rrm1_1 229 300 IPR000504 GO:0003723
Stsc60463g00016 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 304 IPR000504 GO:0003723
Stsc60463g00016 351 MobiDBLite consensus disorder prediction 1 24 - -
Stsc60463g00016 351 Gene3D - 163 301 IPR012677 -
Stsc60463g00016 351 Coils Coil 171 205 - -
Stsc60463g00016 351 MobiDBLite consensus disorder prediction 127 146 - -
Stsc60463g00016 351 MobiDBLite consensus disorder prediction 156 178 - -
Stsc60463g00016 351 SUPERFAMILY RNA-binding domain, RBD 218 323 IPR035979 GO:0003676
Stsc60463g00016 351 MobiDBLite consensus disorder prediction 159 178 - -
Stsc60463g00016 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 298 IPR000504 GO:0003723
Stsc60463g00016 351 CDD RRM_II_PABPs 229 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60463g00016 Stsc-Chr60463 76373 83469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60463g00016 229 333 Eukaryotic Initiation Factors Gene Family AT2G36660 33.898 1.85e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60463g00016 K14396 - gmx:100527545 322.398