Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60462g00008 ATGGCTTTGAATTCAAGCTCAGTTGTTATGAAATTGGCGCTGTTTTCGTCGCCGGATACTGCCTCTGTGGATTCCATTACTCTGTTTGTGCTTCTCCTTTGTGCTTGTGTTCTCATTGGCCATCTTCTCGAGAAGAGTCGATGGATGACTGAGTCGGTCGTTGCCATAATCATTGGCCTTTTCACTGGAACCATAATTCTAATGACAACTAAGGGGAGAAGTTCACACATCTTGGTGTTCGACGAGGAGCTTTTCTTTATTTATCTTCTTCCACCCATTATATTCAATGCAGGGTTCCAGGTGAAAAAGAAACAATTCTTTCGGAACTTTCTGGCAATTATTCTGTATGGTGTTGTTGGGAGTTTAATATCATTTCTCATTGTATCATTGGGTTCCTTACAGTTGTTCAAATCATTGGATCTCGATTTAATGGGCTTGGGAGACTATTTCGCGCTCGGAGCTGTTTTCTCAGCAACCGATTCTGTTTGCACATTACAGGTGCTTAATCAGGAAGAGACACCGCTCCTATACAGTCTAGTTTTCGGTGAAGGGGTGGTCAATGATGCGACTTCTGTGGTTCTTTTTAACGCAATCCAGAAATTCGACCTCTCACACATCACCTCAGCCAATGTCCTGCAGTTCATCGGCAATTTCTTCTATTTATTCCTGGCAAGCACTTTCCTTGGAGTAGTGGTCGGCTTGCTCAGTGCTTACGTTATAAAGAAGTTGTATATTGGGAGGCATTCAACTGACAGAGAAATCGCTCTTATGATCCTGATGGCTTACATGTCTTATATGTTGGCTGAACTTCTCGATTTGAGTGGGATCCTTACCGTGTTCTTCTGTGGGATTGTCATGTCACACTATACCTGGCATAATGTTACTGAAAATTCTAGAATCACAAGCAGGCATGCTTTTGCAACCTTTTCTTTCGTATCCGAGATTTTTATCTTCTTGTATGTTGGGATGGATGCTTTGGACATGGAGAAGTGGAAATACGCCAGCGATAGTCCGTGGACATTATTTGGGGCCTGTGGAATACTGCTTTGCTTGGTTCTGCTCGGAAGGGCTGCGTTCGTGTTCCCCCTTTCATTCATAGCTAATTTGTTCAGGAAGTCCAAGGCTGATAAGATTGCATTCAAGCAGCAGGTGGTAATATGGTGGGCTGGGCTCATGCGAGGTGCTGTATCCATTGCCCTCGCATATAATAAGTTTACTAGAAAAGGTCATACTCAACTGCAAGGGAATGCTATCATGATCACCAGCACCATCACAGTTGTCCTTTTGACTAATGTGGTGGGTGGATTACTAACCAAGCCTCTGATAAGGTCATTGCTTGATCCACACAAGAATGGCGGGGACTCAGTAGCATCTGACTCATTTTCTTCTAAGACATTGCCACTTCTCGCAAATGGACAAGGATCAGAATCCAACATAGATACTGGAAACCCTATCGATTCAAGCCAAGTTGTCCACCATTATTGGAGAAGGTTCGACGACAGTTTCATGCGCCCCATGTTCGGAGGTAGGGGGTTTGTTCCTGTTGTTCCAGGTTCACCTGAAGAAGGTAGTAGTCTACATTAG 1584 0.4388 MALNSSSVVMKLALFSSPDTASVDSITLFVLLLCACVLIGHLLEKSRWMTESVVAIIIGLFTGTIILMTTKGRSSHILVFDEELFFIYLLPPIIFNAGFQVKKKQFFRNFLAIILYGVVGSLISFLIVSLGSLQLFKSLDLDLMGLGDYFALGAVFSATDSVCTLQVLNQEETPLLYSLVFGEGVVNDATSVVLFNAIQKFDLSHITSANVLQFIGNFFYLFLASTFLGVVVGLLSAYVIKKLYIGRHSTDREIALMILMAYMSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTENSRITSRHAFATFSFVSEIFIFLYVGMDALDMEKWKYASDSPWTLFGACGILLCLVLLGRAAFVFPLSFIANLFRKSKADKIAFKQQVVIWWAGLMRGAVSIALAYNKFTRKGHTQLQGNAIMITSTITVVLLTNVVGGLLTKPLIRSLLDPHKNGGDSVASDSFSSKTLPLLANGQGSESNIDTGNPIDSSQVVHHYWRRFDDSFMRPMFGGRGFVPVVPGSPEEGSSLH 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60462g00008 527 PANTHER SODIUM/HYDROGEN EXCHANGER 17 507 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Stsc60462g00008 527 Gene3D - 23 447 IPR038770 -
Stsc60462g00008 527 Pfam Sodium/hydrogen exchanger family 30 442 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Stsc60462g00008 527 NCBIfam sodium/hydrogen exchanger 3 25 468 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc60462g00008 527 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc60462g00008 527 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc60462g00008 527 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc60462g00008 527 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60462g00008 Stsc-Chr60462 80631 85702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60462g00008 6 525 Antiporters AT3G05030 65.736 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60462g00008 - K14724 qsu:112020558 723.005