Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60462g00007 ATGTCGTTTAGGAGTATAATCTTTGATATGAGGGGTTTGAGATCCAGGTCTCAATCACACCATAGAGATGGTGTTGGTGGTGTTGTTAGTGTTAATGAAGGTGGTGGTTTGGTGGTTCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCACCTGAGCTATTGAGAGATGTGCTTCTGAGGATTGAAGCCTCTGAAGATGCCTGGCCTGCCCGGAAACACGTCGTTGCCTGCGCCGGCGTGTGCCGCAGCTGGAGGGAGATCATGAAGGAAATTGTCAAGTCTCCTCAAGTTTCAAGCAAGCTCACATTCCCAATCTCATTGAAGCAGCCTGGTCCAAGAGATTCTCTTCTCCAGTGTTATATTAAACGTAATCGTAGTAGTCAAACATATTATCTGTACCTTGGTTTAAATCAAGCCTCCACTGATGATGGAAAGTTCCTTCTTGCTGCACGCAAGTGTCGTCGTGCAACTCACACTGACTATATCATCTCTCTTAACTGCGATGACGTATCAAGAGGGAGTAGCACCTATATTGGAAAACTTAGATCAAACTTCCTGGGTACTAAGTTCACCATATATGATGCGCACCCTCCACTTTGTGGAGCTGCCAAAGTTACAAAGTCTCGTTCCACTAGGCTTGTTAGTCTTAAGCAAGTGTCTCCAAGAGTTCCTGCCGGCAACTATCCCGTTGCGCATGTTTCGTATGATCTGAATGTTTTGGGATCCAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATACCCGCATCAGCTGTTGAACCCGGCGGTGTAGCCCCAACACAGACTCATTTTCTCCATAGCAGAACTGAAACTTCTCCATCTATCCCCTTCTTTAGATCAAAATCTACCCGTGTCGACAATCTCCAACCAGTTCCTTCGACTACTCAAAACGAGGGAATGCTTGTATTACGAAACAAGTCCCCTAGGTGGCACGAACAACTCCAGTGCTGGTGTTTGAACTTCAATGGACGAGTGACAGTAGCCTCTGTTAAAAACTTCCAGCTGGTTGCATCACCGAAAAATGGAGTTTCCGAGCAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAAGATGTATTCACCATGGATTACCAGTATCCGATCTCTGCCTTCGAAGCATTTGCAATTTGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1206 0.4569 MSFRSIIFDMRGLRSRSQSHHRDGVGGVVSVNEGGGLVVLDGLKQSCWANMPPELLRDVLLRIEASEDAWPARKHVVACAGVCRSWREIMKEIVKSPQVSSKLTFPISLKQPGPRDSLLQCYIKRNRSSQTYYLYLGLNQASTDDGKFLLAARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTIYDAHPPLCGAAKVTKSRSTRLVSLKQVSPRVPAGNYPVAHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTHFLHSRTETSPSIPFFRSKSTRVDNLQPVPSTTQNEGMLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60462g00007 401 CDD F-box_AtTLP-like 48 92 - -
Stsc60462g00007 401 ProSitePatterns Tub family signature 2. 386 401 IPR018066 -
Stsc60462g00007 401 SUPERFAMILY F-box domain 42 91 IPR036047 GO:0005515
Stsc60462g00007 401 Pfam Tub family 109 396 IPR000007 -
Stsc60462g00007 401 Gene3D Tubby Protein; Chain A 105 401 IPR025659 -
Stsc60462g00007 401 PANTHER TUBBY-RELATED 41 399 - -
Stsc60462g00007 401 Pfam F-box domain 48 94 IPR001810 GO:0005515
Stsc60462g00007 401 FunFam Tubby-like F-box protein 105 401 - -
Stsc60462g00007 401 SUPERFAMILY Tubby C-terminal domain-like 97 401 IPR025659 -
Stsc60462g00007 401 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Stsc60462g00007 401 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Stsc60462g00007 401 PRINTS Tubby superfamily signature 379 401 IPR000007 -
Stsc60462g00007 401 PRINTS Tubby superfamily signature 331 347 IPR000007 -
Stsc60462g00007 401 PRINTS Tubby superfamily signature 313 330 IPR000007 -
Stsc60462g00007 401 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Stsc60462g00007 401 PRINTS Tubby superfamily signature 179 203 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60462g00007 Stsc-Chr60462 71372 75230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60462g00007 1 401 TUB Transcription Factor Family AT2G47900 73.415 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc60462g00007 Tub 1.1e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60462g00007 K19600 - gmx:100809257 708.368