Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60461g00011 ATGGGCAGCCCAAAGTCCATTTCCACTGGAATTGGTAAAAGTGGTTTTATAGTCTCTACTCATGGCGAGGTTGAAGCGAAACATCGATTGCTTTTGGTTCAATGGATATCTACCCTTCTTCCTTCACTAAACTTACCAATAGATATCACGGATGATGTCTTAAGAGCATGCTTGAGGGATGGTATCGTTTTGTGTCAGATACTGAACAAGCTTCGCCCAGGTTCCATCCCGGTGGTTAGTGAATTTGATCATGAAGAAAATATAAAATCGTTTCTGAAAGCTATGGATGGAATGGGATTGCCTCAGTTTGAAATATCAGACTTGGAGAAGGGATCCATGAAGCCAGTTGTGGATTGTTTATTATCACTCCGAGCAAAGAGTTTGCTGAATTCTTTTGGGGATAATAGTTCTTCTACAACTAATTCCAAAATAGGGAGCCCTCGTGGGATTACAGTTCCTAGTCTTCAGTTTCCACCACCATCCGAGACGGCTATAAAGCACCATCGTTCCATGAGTAGCCCATTCTTGACAGAGTCACCAACTTCATTGATGCACCAGGTTGGTCTCAAGTTCCACGAGGTGTTTCAAGAGAAACAAGAAAGTTATGCAGATCTTTCTCCAACAAAAATATCAGAAATGGTGAAATCAGTCAGTTTAGATAGTGCTCCAACTCAGTCTCTTCTAGGTGTTGTGAATGGTATTCTTGAAGAAGCTGTTGAAAAACGAAATGGCGAAATACCTTATCGTGTGACCTGCTTGTTGAGAAAAGTTTCCCTAGAGCTTGAGCGCCGCATGTCAGCCCAAGCGGAGCACTCGCGAACTCAAAGCAATCTTTTCAAGGTTCGTGAAGAAAAGTATCAATCCAGAATTAGAGTACTTGAGGCGCTTGCATCTGGAACTATCACAGAAGAGGGTGAGGCTGAGAGGGTCATAGAGGAAGAAAATAAGTCTGATGACAAGGATTTTGAAAGGTCCATGAAAAAGCAGGAGGACAAAATTATGGAAATTTCAGCATTGACTGAAGATCTAGAAACAAGCAAAAAAGCACTTGAATTAAAATGCTCACAATTAGAAGCAGAAGCTATAGGAGCTAAAGCAGAAATAGAACATAAAACTAAAGCATATGAGCAGCAATTGGAAGAATGGCATATTAAGTGTAAGGAGCTTGAGTCTTCTTATGTTTCAAAATATAACGAGTGGAACATGAAAAAGAACCAGATGCTGAACGTTGTAAATTTTCAATCTAGTAACCTACAGAAAATGAAATTATCTTGGGAGTCCATTAAGCAAGATGTTATGCAAGAGCAAAATGTTTATGCAGAGGAGTGTAATCGTGTAGGTGTAAAACTTAAATCACTGGCGCATGCAGCCGAGAACTATAAGGTTGTTATGGCTGAAAATCGAAAATTGTTCAATGAAATTCAAGAATTAAAAGGAAACATCAGAGTGTATTGTCGCATTAAACCATTTCTTAATGGGGCAAAAGAAAAACCCTCCATTGTTGAACACATTGGAGAAGATGATTTGGTTGTGGCGAATCCCTCGAAGCAAGGGAAAGATGCTCTTCGTTCCTTCAAGTTTAATAAGGTTTTCGGGCCTGGTGCAACTCAAGAGGAGGTATACACTGACATACAGCCACTTACAAGATCAGTTCTTGATGGATATAACGTATGCATATTTGCTTATGGTCAAACTGGTTCAGGAAAAACATACACAATGACTGGTCCAACCGGAGCAACTAGTGAGAATCTTGGTGTTAATTACCGGGCTCTGAATGATCTTTTCAGACTTTCCACTAGTAGAACGAGCTCCATTGAGTATGAGATCGGGGTTCAGATGGTTGAGATATACAACGAGCAACCAGAGGGATTAGCAGTGCCTGATGCAAGCATGTTCCCTGTGAATGCACCTTCAGATGTGATAAAGCTAATGGACATTGGACTACAACATAGAGCCATTAGTGCTACAGCCATGAATGAAAGAAGTAGCCGTTCACACAGTGTGGTGACGATTCATGTTCGAGGGAAAGATTTGAACTCGGGTTCTACACTAGTTGGTAATCTTCATTTGGTGGATTTAGCAGGAAGTGAAAGGGTAAATAGATCTGAAGTAACTGGGGATAGGCTTAAGGAGGCACAACATATAAACAAATCACTTGCTGCATTTGGAGATGTGATCTTTGCCCTCTCTCAAAAGAGCTCCCATGTACCATATAGAAACAGCAAGCTCACTCAGCTTCTGCAATCTTCTCTCGGTGGTCATGCAAAGACTCTCATGTTTATCCAAATCAACTCTGACATAACTTCATATTCCGAAACATTGAGTACTCTCAAGTTTGCTGAGAGGGTTTCTGGAATTGAATTAGGAGCTGCTAGAAGTAATAAAGAGAGCAAGGATGTGAAAGAGTTAATGGAACAAGTGGCTTCTCTGAAGAACAGTATATCAAGAAAAGATGAGGAGATTGAGCGGTTACAAGTACTTCACCTTAGGCAAGTCCAAAGACCAAGCAGAAGTCCAAGGAATGAATCTCTCCGGCGAAGTAAATCTGCTATTCCAGGAGACAAAATCCATCAGGAAAACTGGTCTTACACAGATTCGGATTTTGATGAAAGATCTAACACTAATTCTGATTATGGTTATGGTTCTGAAAGCTCAAAATCATCAGAAAAGACAGAAAAAACGAAACTAGCACACAGAAGCGTTACATCGATGAAGAAAGCATCAGTAAAAATATCATCTCCGACGAAAACACCAAGGGAGACCCCCAAGATGTCACCAGCTCCAGGTGGGAGTAAGGAAAAGCGCCAGCATTGGGCACATAAGACCGGCGGCAGCTTCAAAACGGTGGCAGTAAAACGCCCGGACTAG 2868 0.4121 MGSPKSISTGIGKSGFIVSTHGEVEAKHRLLLVQWISTLLPSLNLPIDITDDVLRACLRDGIVLCQILNKLRPGSIPVVSEFDHEENIKSFLKAMDGMGLPQFEISDLEKGSMKPVVDCLLSLRAKSLLNSFGDNSSSTTNSKIGSPRGITVPSLQFPPPSETAIKHHRSMSSPFLTESPTSLMHQVGLKFHEVFQEKQESYADLSPTKISEMVKSVSLDSAPTQSLLGVVNGILEEAVEKRNGEIPYRVTCLLRKVSLELERRMSAQAEHSRTQSNLFKVREEKYQSRIRVLEALASGTITEEGEAERVIEEENKSDDKDFERSMKKQEDKIMEISALTEDLETSKKALELKCSQLEAEAIGAKAEIEHKTKAYEQQLEEWHIKCKELESSYVSKYNEWNMKKNQMLNVVNFQSSNLQKMKLSWESIKQDVMQEQNVYAEECNRVGVKLKSLAHAAENYKVVMAENRKLFNEIQELKGNIRVYCRIKPFLNGAKEKPSIVEHIGEDDLVVANPSKQGKDALRSFKFNKVFGPGATQEEVYTDIQPLTRSVLDGYNVCIFAYGQTGSGKTYTMTGPTGATSENLGVNYRALNDLFRLSTSRTSSIEYEIGVQMVEIYNEQPEGLAVPDASMFPVNAPSDVIKLMDIGLQHRAISATAMNERSSRSHSVVTIHVRGKDLNSGSTLVGNLHLVDLAGSERVNRSEVTGDRLKEAQHINKSLAAFGDVIFALSQKSSHVPYRNSKLTQLLQSSLGGHAKTLMFIQINSDITSYSETLSTLKFAERVSGIELGAARSNKESKDVKELMEQVASLKNSISRKDEEIERLQVLHLRQVQRPSRSPRNESLRRSKSAIPGDKIHQENWSYTDSDFDERSNTNSDYGYGSESSKSSEKTEKTKLAHRSVTSMKKASVKISSPTKTPRETPKMSPAPGGSKEKRQHWAHKTGGSFKTVAVKRPD 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60461g00011 955 Pfam Calponin homology (CH) domain 31 124 IPR001715 GO:0005515
Stsc60461g00011 955 SUPERFAMILY Calponin-homology domain, CH-domain 24 125 IPR036872 -
Stsc60461g00011 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 824 IPR027417 -
Stsc60461g00011 955 MobiDBLite consensus disorder prediction 133 174 - -
Stsc60461g00011 955 MobiDBLite consensus disorder prediction 133 149 - -
Stsc60461g00011 955 Gene3D Kinesin motor domain 624 790 IPR036961 -
Stsc60461g00011 955 SMART ch_5 28 126 IPR001715 GO:0005515
Stsc60461g00011 955 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 422 627 - -
Stsc60461g00011 955 ProSiteProfiles Kinesin motor domain profile. 480 786 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60461g00011 955 Gene3D - 19 128 IPR036872 -
Stsc60461g00011 955 MobiDBLite consensus disorder prediction 839 853 - -
Stsc60461g00011 955 Coils Coil 340 392 - -
Stsc60461g00011 955 Coils Coil 793 827 - -
Stsc60461g00011 955 MobiDBLite consensus disorder prediction 905 920 - -
Stsc60461g00011 955 PANTHER KINESIN-LIKE PROTEIN KLP-3 48 906 IPR027640 GO:0003777|GO:0007018
Stsc60461g00011 955 PRINTS Kinesin heavy chain signature 736 757 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60461g00011 955 PRINTS Kinesin heavy chain signature 656 673 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60461g00011 955 PRINTS Kinesin heavy chain signature 687 705 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60461g00011 955 PRINTS Kinesin heavy chain signature 554 575 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60461g00011 955 SMART kinesin_4 478 794 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60461g00011 955 Gene3D Kinesin motor domain 421 623 IPR036961 -
Stsc60461g00011 955 FunFam Kinesin-related protein3 628 828 - -
Stsc60461g00011 955 Pfam Kinesin motor domain 623 785 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc60461g00011 955 ProSiteProfiles Calponin homology (CH) domain profile. 26 128 IPR001715 GO:0005515
Stsc60461g00011 955 MobiDBLite consensus disorder prediction 832 955 - -
Stsc60461g00011 955 Coils Coil 460 480 - -
Stsc60461g00011 955 Gene3D - 317 358 - -
Stsc60461g00011 955 Pfam Microtubule binding 466 620 IPR031852 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60461g00011 Stsc-Chr60461 80109 84768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60461g00011 460 820 Calmodulin-binding Proteins AT5G65930 37.306 8.65e-66 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60461g00011 K10406 - qsa:O6P43_008574 1001.5