Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60461g00004 ATGAGCACTGACATGAAAGAAGCAGCTGCAGCTGCAACTGCAAGTGCCTTGGGTGCCAAGACAGCCAGGCTCACCTCCAACAAGGTAACCACCGCACACGCATGGCACAGTGGGTTCACGCGCAAGGCGAGAACACCGCGCCACAGCAACAACAAGCACTTGGCCTTACAGCAGAGGCTTAAGGACCAAGTTTTATTCAACACAGCTTGTGTTCTTCCCGTTGTTCCAGAGCTCGGAGTTGAAGAAACAGATCTTCTTGATGATCATCATGAGAGTGAGGATCCGGAGCAGCTGCTGTGTCGCGTGCCCGTGTTTGACCCTTTCGATGCAGAGCTTTGCAATGATAACGGAAACGGAGGTTGTTGTGATGACTTGGAGAGCTTCTCTGAGTTTCTGCCATCGGATATGGATCTTGCCGAGTTTGCTGCTGATGTTGAAACCCTGCTTGGAAGTGGGATTGACGAGGATAATTCAGTAGGGTTTGGTTGCAAAGAAGAAGTTCAAAGAGAAGAAATCGCCGTTAATGTTAATGATGGTGCAATGGTGATGGTAAAGGTGAAGGATGAGGAGCTTGATGCAGATACAGCAAGTCATCTGCAGTCAGTTCTTGACATCACAAACGATGATGAATTTGATTGGAATATCGAATCAGTGCTCTTGCCCGCTGAAACAGGTGAAGAGGAGGAAAAGGTAATCGCGGCTGCAGCAGCAGCAAGTAATAATAGTAGCAGTAATGAGAAAAAGAGGGACATATTTTTGAGACTAAACTATGAAGAAGTTATAAATGCTTGGGCAAGCCAAGGTTCTCCATGGACAACAGGAAATCCTCCTGATTTCAACCCTGATGATCATTCCTGGCCAAATTCCTTGGATCCGAGTGGTGGAGATGTTCATCAGTTGTCTTGTTATGGGGATGGGAGAAGCGTGAGGGGACATTTTGGAGATGGGGGAAGAGAAGCAAGAGTGTCTAGGTACAGGGAGAAGAGAAGGACTCGTTTGTTTGCTAAGAAAATAAGATATGAAGTGAGGAAACTGAATGCGGAGAAGAGACCTAGAATGAAAGGTAGATTTGTCAAGAGAGCATGCCTTGTTGGAGGAGCCACTACTACTACTTCTACTTCCTTTCAACCCTCCTATCACTGA 1143 0.4672 MSTDMKEAAAAATASALGAKTARLTSNKVTTAHAWHSGFTRKARTPRHSNNKHLALQQRLKDQVLFNTACVLPVVPELGVEETDLLDDHHESEDPEQLLCRVPVFDPFDAELCNDNGNGGCCDDLESFSEFLPSDMDLAEFAADVETLLGSGIDEDNSVGFGCKEEVQREEIAVNVNDGAMVMVKVKDEELDADTASHLQSVLDITNDDEFDWNIESVLLPAETGEEEEKVIAAAAAASNNSSSNEKKRDIFLRLNYEEVINAWASQGSPWTTGNPPDFNPDDHSWPNSLDPSGGDVHQLSCYGDGRSVRGHFGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRACLVGGATTTTSTSFQPSYH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60461g00004 380 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 26 361 - -
Stsc60461g00004 380 ProSiteProfiles CCT domain profile. 318 360 IPR010402 GO:0005515
Stsc60461g00004 380 Pfam CCT motif 318 360 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60461g00004 Stsc-Chr60461 49214 50855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60461g00004 35 360 C2C2-CO-like Transcription Factor Family AT1G25440 40.510 8.84e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc60461g00004 CCT 1.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60461g00004 - - adu:107478728 553.132