Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60459g00033 ATGTCCAATGGCTCTTTGCAAGATAGACTATACGGGGGACTGTCAACGAGAAAAATACTAGACTGGCCAACTAGACTCTCCATTGCTCTTGGTGCCGCTCGAGGTTTGGCATATTTGCACTCGTTCCCTGGGCGATCTGTAATTCACAGGGACGTGAAATCAAGCAATATACTTCTGGATCACAGCATGTGTGCTAAGGTTGCAGATTTTGGTTTCTCAAAATATGCTCCACAGGAAGGAGATAGTGCTGTTTCGCTCGAAGTAAGAGGAACTGCAGGATATCTTGATCCTGAGTACTATACAACCCAGCAATTATCTGCAAAGAGTGATGTCTTTAGCTTTGGTGTGGTTCTTCTTGAAATTGTGAGTGGCCGGGAGCCTCTCAACATCCACAGACCGCGGAACGAGTGGAGTTTGGTTGAATGGGCTAAACCGTATATAAGGGCATCAAAGATTGAGGAAATTGTGGATCCCGGCATCAAGGGAGGGTACCATGCAGAAGCAATGTGGAGAGTGTTGGAAGTAGCATTGCAATGTGTTGAGCCTTTCTCAGCAAATAGACCGGTCATGGATGATGTCATGCGAGAGTTGGAAGATGCTCTGATCATAGAAAACAATGCATCAGAGTACATGAAGTCCATAGAGAGCATTGGATCCAACCGCTATTCCATTGTCATGGAGAAAAGGGTGCTACCCTCGACTTCATCCATGGTGGAATCAACCATCATACCTCAATCCTTGAACCATCCGCAGCCAAGATAG 762 0.4606 MSNGSLQDRLYGGLSTRKILDWPTRLSIALGAARGLAYLHSFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSAVSLEVRGTAGYLDPEYYTTQQLSAKSDVFSFGVVLLEIVSGREPLNIHRPRNEWSLVEWAKPYIRASKIEEIVDPGIKGGYHAEAMWRVLEVALQCVEPFSANRPVMDDVMRELEDALIIENNASEYMKSIESIGSNRYSIVMEKRVLPSTSSMVESTIIPQSLNHPQPR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60459g00033 253 Gene3D Transferase(Phosphotransferase) domain 1 1 221 - -
Stsc60459g00033 253 SUPERFAMILY Protein kinase-like (PK-like) 1 201 IPR011009 -
Stsc60459g00033 253 SMART serkin_6 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60459g00033 253 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Stsc60459g00033 253 PANTHER OS01G0750732 PROTEIN 1 204 - -
Stsc60459g00033 253 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 1 217 - -
Stsc60459g00033 253 ProSiteProfiles Protein kinase domain profile. 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60459g00033 253 Pfam Protein tyrosine and serine/threonine kinase 1 197 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60459g00033 Stsc-Chr60459 171596 173186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60459g00033 1 204 Receptor kinase-like Gene Family AT1G67720 52.451 4.07e-59 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc60459g00033 PK_Tyr_Ser-Thr 1.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60459g00033 - - gmx:100781986 445.662