Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60459g00025 ATGGAGGAGGGTAAGAGGATGAGGAAACAAGGTTTCTTGTTGTGGTGGTTTGGAATGACTATGCAACTCTGCTTCTTCTTCTTGTTGCTTGGTGGTGCCTCCTCTTCTGAGACGACATCATTAAGCAGAAGAGGCATAAGGGGGAGCAAAAGCTTGCAGGCACCACCATCTTCCGATTTTAAAGTCAAGCTTAATGACGAAAGCCAGGAGCAGTTGGTGGTTGACAATGGTATTGTTTCATTGACTTTGTCAATACCGGAGGGTTATGTCCTTGCTATATCCTATAATGGAATTGAAAACGTGCTTGAACCTCAAAATGAAGATCAAGATAGAGGGTACTTCGATGTTGTTTGGAATGAACCAGGAAAAGCCAGTTCCTTTCAGAGAATCCACGGGACAAATTTTTCGGTTATAACTGCCGACGAGAATATGGTGGAGCTTTCATTTTTAAGGGCATGGACAGCTTCCATGGAGGGTTCCAGTGTCCCCATGAATATAGACATAAGGTACATTTTGCGAAGAGGCGATTCAGGATTTTATTCATATGCAGTATTTGATCGACCTGATGATGGATTTCCAGCTGTGGAGGTTGATCAAATTAGATTTGTCTATAAGCTCCTCAAAGACAGGTTCACCTATATGGCTGTATCTGATACAAGGCAGAGAATGATGCCAACAATGAGAGACAGAGAAACGGGACAAATCTTGGCTTACCCTGAAGCTGTTCTCTTAACCAAACCAACTAACCCTCAATTCAGAGGAGAGGTGGATGACAAATACCAATACTCATGTGAGAACAGTGACAACAATGTTCATGGATGGATTAGCCTTCAGTATGATCAACCCGTGGGTTTCTGGATGATTACTCCTTCCAATGAGTTCCGTAATGGTGGGCCCATCAAGCAGGACCTCACTTCTCATGTTGGTCCCTTCACTCTCTCCATGTTTGTCAGCACTCACTATGCTGGCAAAGAAGTCACCATGTCCTTTCAACAAGGGGAGGCTTATAAAAAGGTTTTTGGTCCTGTTTTTATCTACCTAAACTCTGCTTCAACCACTCCTCATGATCCCTTATCTCTCTGGTCAGATGCTATGAACCAGCTCTCCAAGGAAGTCAAAGCCTGGCCTTACAATTTTACACAATCACCAGATTACTTTCCACCCGATCAACGAGGAACAGTGTTAGGAAGATTGTTAGTCCAAGATTGGTGCGTTAAGGGAGGTAGATTACAGTATGCTAACAATGCTTATGTTGGCCTGGCATTATCTGGTGATGCAGGATCATGGCAGAAAGAGAGCAAGGGCTATCAATTTTGGACTCTGGCTGACCCCAAGGGTTACTTTGCAATTAAAAATGTTGTACCCGGGGATTATAACCTTTATGCTTGGGTACCTGGCTTTATTGGTGATTACCGATATAATTCTACAATCACCATCACCCCAGGAGGAGTGATCAAATTGGATAAACTTATATATAATCCTCCTAGAAATGGACCAACCCTATGGGAAATTGGTATCCCAGACAGAAGAGCTGCAGAGTTCTACGTACCAGATCCTTACCCTACTCTCATGAACAGATTATACAATGAAAAACACAGTGACAAGTTTAGGCAATACGGCTTGTGGGAACGTTATTCTGATATGTATCCAAATGATGATCTTGTTTACACTGTTGGTGTCAACGAGTACAAGAAGGACTGGTTTTATGCCCATGTTACAAGGAATATGGGGAATAAGACATACGCAGCAACAACGTGGCAAATTATATTTGAACATAGCAATGACATAATAGAAGGAAACTACACGCTACAATTAGCCCTTGCATCTGCTGCTGATGCAGAACTTCAGGTTCGGTTCAATGAGCCAAGTGTATATCCTGCACACTTTGGAACAGGGCCAATAGGAGGAGACAATGCCATAGCAAGACACGGAATCCATGGATTGCATAGGCTATATAGTATTGATGTGCCTAGTCATCATTTTGTGAAAGGGAACAATATCATTTATCTTAGGCAGTCTAGAGCTGTAAACCAATTTCAAGGAGTTATGTATGATTATATCCGTTTAGAAAGACCACCAAACCCAACCACTTGA 2094 0.4245 MEEGKRMRKQGFLLWWFGMTMQLCFFFLLLGGASSSETTSLSRRGIRGSKSLQAPPSSDFKVKLNDESQEQLVVDNGIVSLTLSIPEGYVLAISYNGIENVLEPQNEDQDRGYFDVVWNEPGKASSFQRIHGTNFSVITADENMVELSFLRAWTASMEGSSVPMNIDIRYILRRGDSGFYSYAVFDRPDDGFPAVEVDQIRFVYKLLKDRFTYMAVSDTRQRMMPTMRDRETGQILAYPEAVLLTKPTNPQFRGEVDDKYQYSCENSDNNVHGWISLQYDQPVGFWMITPSNEFRNGGPIKQDLTSHVGPFTLSMFVSTHYAGKEVTMSFQQGEAYKKVFGPVFIYLNSASTTPHDPLSLWSDAMNQLSKEVKAWPYNFTQSPDYFPPDQRGTVLGRLLVQDWCVKGGRLQYANNAYVGLALSGDAGSWQKESKGYQFWTLADPKGYFAIKNVVPGDYNLYAWVPGFIGDYRYNSTITITPGGVIKLDKLIYNPPRNGPTLWEIGIPDRRAAEFYVPDPYPTLMNRLYNEKHSDKFRQYGLWERYSDMYPNDDLVYTVGVNEYKKDWFYAHVTRNMGNKTYAATTWQIIFEHSNDIIEGNYTLQLALASAADAELQVRFNEPSVYPAHFGTGPIGGDNAIARHGIHGLHRLYSIDVPSHHFVKGNNIIYLRQSRAVNQFQGVMYDYIRLERPPNPTT 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60459g00025 697 CDD RGL4_C 502 690 - -
Stsc60459g00025 697 CDD RGL4_N 71 352 - -
Stsc60459g00025 697 CDD RGL4_M 390 490 IPR029413 -
Stsc60459g00025 697 Pfam Polysaccharide lyase family 4, domain II 414 486 IPR029413 -
Stsc60459g00025 697 Gene3D - 387 488 - -
Stsc60459g00025 697 SUPERFAMILY Galactose-binding domain-like 497 690 IPR008979 -
Stsc60459g00025 697 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 63 693 - -
Stsc60459g00025 697 Pfam Rhamnogalacturonate lyase family 58 256 IPR010325 -
Stsc60459g00025 697 FunFam Rhamnogalacturonate lyase B 387 487 - -
Stsc60459g00025 697 Gene3D - 498 690 - -
Stsc60459g00025 697 SUPERFAMILY Starch-binding domain-like 385 488 IPR013784 GO:0030246
Stsc60459g00025 697 Gene3D - 64 368 IPR014718 GO:0030246
Stsc60459g00025 697 SUPERFAMILY Galactose mutarotase-like 67 353 IPR011013 GO:0003824|GO:0005975|GO:0030246
Stsc60459g00025 697 Pfam Polysaccharide lyase family 4, domain III 500 689 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60459g00025 Stsc-Chr60459 130904 136042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60459g00025 72 694 Polysaccharide Lyase AT1G09910 56.000 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60459g00025 K18195 - gmx:100776664 1072