Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60459g00024 ATGGAGCATCCAAGAAAGGCTTTTGGTTGGGCGGCCACAGACTCATCTGGCATTCTCTCCCCCTTCAACTTCTCCAGAAGGGAAACTGGAGAGAATGATGTTACATTCAAAGTGCTCTACTGTGGTATATGCCACTCAGATCTCCACATGGTCAAGAACGAATGGGGCAACACCATTTATCCCTTAGTACCTGGGCATGAGATTGTGGGCACAGTAACAGAGGTTGGAAGCAAGGTACAAAAATTCAAGCTTGGAGACAAGGTGGGAGTTGGCTGCATGGTCCAATCCTGCCGCAAATGTCAAAGCTGCGCTGAAAATCTTGAAAACTACTGTCCACAAATGGTTCTCACTTACGGCGCCAACAACGTTGATGGCACCATCACCTATGGAGGCTACTCTAATTTCATGGTGGCAGATCAACACTTTGTCATCCGCATTCCGGATGCCCTGCCTCTTGATGCCGCCGCTCCTCTCCTCTGTGCCGGCATCACTGTGTATAGCCCCATGATGTATTTTGGACTCAATAAGCCCGGTTTGCATTTGGGTGTGGTTGGTCTGGGAGGGTTAGGCCATATGGCTGTCAAGTTCGGTAAAGCCTTTGGGATGAAGGTCACTGTCATTAGCACTTCTCCTGCTAAGAAAGCTGAAGCCATTCAACATCTTGGAGCCGATTCCTTTGTGCTTAGCACTGACCCACATCAGATGAAGGTTGCAATGGGAACCTTGGATGGTATTATTGACACGGTTTCAGCCGTTCACCCTTTGGTTCCGTTGCTTGGTCTATTGAAGTCTCATGGGAAGATTGTCATGGTTGGTGCACCGGAGAAGCCTCTAGAGCTACCCGTATTTCCTTTAATTATGGGGAGAAAGTTAGTAGCTGGAAGTTGCATTGGAGGGATTAAGGAGACACAAGAGATGATTGATTTTGCTGCCAAACACGGTGTTAAACCTGACATTGAGGTTATTCCTATGGATTATGTGAACACCGCAATGGAGCGTCTCCTCAAAGCGGATGTCAAGTACAGATTTGTTATTGACATTGGAAACACACTCAACCCAACTTCTTAA 1068 0.4728 MEHPRKAFGWAATDSSGILSPFNFSRRETGENDVTFKVLYCGICHSDLHMVKNEWGNTIYPLVPGHEIVGTVTEVGSKVQKFKLGDKVGVGCMVQSCRKCQSCAENLENYCPQMVLTYGANNVDGTITYGGYSNFMVADQHFVIRIPDALPLDAAAPLLCAGITVYSPMMYFGLNKPGLHLGVVGLGGLGHMAVKFGKAFGMKVTVISTSPAKKAEAIQHLGADSFVLSTDPHQMKVAMGTLDGIIDTVSAVHPLVPLLGLLKSHGKIVMVGAPEKPLELPVFPLIMGRKLVAGSCIGGIKETQEMIDFAAKHGVKPDIEVIPMDYVNTAMERLLKADVKYRFVIDIGNTLNPTS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60459g00024 355 SMART PKS_ER_names_mod 17 345 IPR020843 GO:0016491
Stsc60459g00024 355 Gene3D - 10 347 - -
Stsc60459g00024 355 FunFam Uncharacterized protein 10 160 - -
Stsc60459g00024 355 Pfam Zinc-binding dehydrogenase 188 311 IPR013149 -
Stsc60459g00024 355 Gene3D - 161 317 - -
Stsc60459g00024 355 Pfam Alcohol dehydrogenase GroES-like domain 32 145 IPR013154 -
Stsc60459g00024 355 PANTHER ALDEHYDE REDUCTASE 2 350 IPR047109 GO:0016616
Stsc60459g00024 355 CDD CAD1 8 346 IPR047109 GO:0016616
Stsc60459g00024 355 FunFam Cinnamyl alcohol dehydrogenase 161 317 - -
Stsc60459g00024 355 FunFam Putative cinnamyl alcohol dehydrogenase 6 318 347 - -
Stsc60459g00024 355 SUPERFAMILY GroES-like 13 178 IPR011032 -
Stsc60459g00024 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 150 316 IPR036291 -
Stsc60459g00024 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 65 79 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60459g00024 Stsc-Chr60459 128332 130027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60459g00024 5 354 Monolignol Biosynthesis Gene Families AT4G37990 73.143 5.11e-176 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60459g00024 K23232 - mnt:21385910 586.645