Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60459g00023 ATGTGGCAAGGTTCATTAGCAGAAGAAAATGAAGCAACGCATGCCTATGGATGGGCTGCAAGAGATTCTTCGGGAATTCTCTCCCCTTTACATTTCACCAGACGGGCAAATGGTGATAGAGATATCAGCATCAAGATACTCTACTGCGGGATTTGCCACTCCGATCTTCATATGCTCAAGAATCACCATGCCATAAGCATCTATCCCTTAGTCCCCGGGCATGAGATTGTGGGGCAAGTAACCAAGGTGGGAAGACAAGTTACAAAATTCAAGGTTGGTGACGTGGCTGGTGTGGGTGGCATTGTGGGCACGTGCGGCACGTGTTCCAACTGCACGCAGGACATGGAAACTTACTGCCCCAAAATGATTCTAACTTCGAGCTCACACTACCATGATGGATCAATAACCTATGGAGGATACTCTGATCATTTTGTTGTTGATGAGCACTTTGCCGTTACTATTCCCAAATCTATGCCTCTGCATGGCACAGCCCCTTTGTTGTGTGCTGGAATCACAGTTTACAGCCCCATGTTGCGCCATGGGCTATGCAGGCCCGGTCAGCACTTGGGTGTGGTGGGCCTTGGTGGGCTTGGACATCTGGCTGTTAAGTTTGCCAAGGCTTTTGGTATGAAGGTCACTGTCATAAGCACTTCTTCCCGGAAGAAGAAGGAAGCAATTGAGCGTCTTGGTGTGGATGCCTTCTTGCTTAGTCATCACCAACAACAATTGCAGGATGCCATGGGAACAATGGATGGAATCATTGACACAGTTTCAGCACCTCATTCTGTGTATCCTTTAGTTGGTTTATTAAAGACAGGTGGCAATTTGATATTGGTGGGTGCACCTGCAGACTCATCATCTCCTGAATTACCATCCCTGCCTCTCATTATGGGGAGGAAGTCAATAAGCGGAAGTGCAGGTGGAGGAATGAGAGAGACACAGGAGATGATTGAATTTGCAGCAAAGCACAATATTAGTGCAGATGCGGAAGTTATTCCCATGGATTATGTGAACACTGCCATGGATAGACTTGTCAACAATGATGTTCAATACCGATTTGTCATTGATGTAGCAAATACTTTGAAGAAACCACTGAGTTATTAA 1104 0.4629 MWQGSLAEENEATHAYGWAARDSSGILSPLHFTRRANGDRDISIKILYCGICHSDLHMLKNHHAISIYPLVPGHEIVGQVTKVGRQVTKFKVGDVAGVGGIVGTCGTCSNCTQDMETYCPKMILTSSSHYHDGSITYGGYSDHFVVDEHFAVTIPKSMPLHGTAPLLCAGITVYSPMLRHGLCRPGQHLGVVGLGGLGHLAVKFAKAFGMKVTVISTSSRKKKEAIERLGVDAFLLSHHQQQLQDAMGTMDGIIDTVSAPHSVYPLVGLLKTGGNLILVGAPADSSSPELPSLPLIMGRKSISGSAGGGMRETQEMIEFAAKHNISADAEVIPMDYVNTAMDRLVNNDVQYRFVIDVANTLKKPLSY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60459g00023 367 Gene3D - 169 327 - -
Stsc60459g00023 367 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Stsc60459g00023 367 PANTHER ALDEHYDE REDUCTASE 10 360 IPR047109 GO:0016616
Stsc60459g00023 367 CDD CAD1 17 356 IPR047109 GO:0016616
Stsc60459g00023 367 Gene3D - 18 357 - -
Stsc60459g00023 367 Pfam Zinc-binding dehydrogenase 196 321 IPR013149 -
Stsc60459g00023 367 Pfam Alcohol dehydrogenase GroES-like domain 40 153 IPR013154 -
Stsc60459g00023 367 FunFam probable cinnamyl alcohol dehydrogenase 18 178 - -
Stsc60459g00023 367 FunFam Putative cinnamyl alcohol dehydrogenase 6 328 357 - -
Stsc60459g00023 367 SMART PKS_ER_names_mod 25 355 IPR020843 GO:0016491
Stsc60459g00023 367 SUPERFAMILY GroES-like 23 187 IPR011032 -
Stsc60459g00023 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 325 IPR036291 -
Stsc60459g00023 367 FunFam Cinnamyl alcohol dehydrogenase 169 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60459g00023 Stsc-Chr60459 126609 127971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60459g00023 14 362 Monolignol Biosynthesis Gene Families AT4G37990 64.183 1.00e-150 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60459g00023 K23232 - qsu:112003912 507.294